Detail information of Os05g0159200_circ_igg.1


General Information
CircRNA Name Os05g0159200_circ_igg.1
ID in PlantcircBase osa_circ_026722
Alias Os_ciR1404
Organism Oryza sativa
Position chr5: 3496224-3500947  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os05g0159200_circ_g.2
Support reads 53
Tissues root
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTGCCGTCGAGCCGGCGATGGCGAAATTCACACCGTTGTTGTAATCCGCTCCCAGTGGCCTCA
TGAACGGGCTGAGGTGGTGAGTGTTCAAGCTCTCACagatgaagtcgatgatgacgcggccgtc
ggagaggcggccggtggggtggtggaagtaggtgcggccctccggcggcatgatccggatcccc
cccgccgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGATGAAGTCGATGATGACGCGGCCGTCGGAGAGGCGGCCGGTGGGGTGGTGGAAGTAGGTGCG
GCCCTCCGGCGGCATGATCCGGATCCCCCCCGCCGCCGCCACGCCGCCGGTGTCGGAGTTGGAG
TCGCCGAAGTTGAACAGCACCACCCCGGCCGCCGCCGCCTGCTCACGCTCCTCCTCCGCGGCCG
TTGTAGCCGCCACTCCGGCTCCGGCGGCGGCGGCGGAGGCGTCCGCTCCCTCTCCGGCGGCGGC
GGTGGCGGCGACGACGGAGCCGAGGTTCTGCCTGACGGCGGCGCCCATGGCGGACGGCGAGACG
AACGCGAGCGAGAGCACCATGACCGCCACCACCACCGCCGCGAGCACGCAGTAGTACTGCAGGC
GCAGGCTGATCACCTTGTTCCCGCCTCCGCCTCCGCCGTTGGTGGGGCTCGCCATGGCCATCGC
GCGAGCTCGCCTGAGCTCTCGCCTTCGCGGAGGAAGAAGACGACGATGGCTGAGTTTCTCTTCT
CTTCTCTCTCAAAAAAAGAGCGGTGAGAAATGTGCGTACGCGTGTATACGCGTATATAGTGTGA
TTAGTGTGTGACTTGGGGTCTCGTGTGGTTAGGTGATAATTAGGAGTAATTAATTACTAGTAGT
AGTTTACTAGGACTAAGTGCACCCGCAATGGTAAAGTAAGGTGCTATCTATAAAACATGTACAC
CTCAACAATAGACTAGATTAATAGTAAACCACTTCAATGGTATGTCTACATGGGTATCTATAGC
TCTCTAATCCATTGCCTCGTTTTTCTCTATAGACTATCTCCATGTTAGTAGATAACTTTGCTCT
CTCTCTTCATTTAATCTCTTCTAAGTAGGAAAATATGCTGACATGGATCTCTTGTAGAGAGCTT
ATAGATAACCATTGTGGGTGCCCTAATGGTGATTAGCGAATGGACATCGAGATACTTAGTACTT
CATCCGGTTGATAATACTTGTCGTTTTGGACAAGGGCACGGTCTCTAAAAAAACAACTTTGACT
ATTATTTTCCATAATAATATGTATTGTTAACAAATATATGATTTTATTAAAGTACTTTTTAAGA
ATAATCTATACATGTAGTCATCATATTTAAAAGACAAATATTTTAAAAATGATTCATAATAAAA
ATTTTAAAATTTGATCTCACTCTTATCTAAAACAACAAGTATTATCAACCCGAAGAAAGTATTA
GTATTATTTAGTTGGACATTTTTGTAGTTAAGACTTAAGAGTGGATTAGTTGGGTTTTGAATGA
GATCACACACTCCCTCTCCTCACTTTTTTGAACTTTTCATAGTTTATAGTACAAGATACATGTT
TGTTGGTGTGTGCTCCCTTTGTGTCATATTACAAATATTGCAAGTTATTTTGAGTTTTTCTTAA
GTTAAATTTCTTTATGTATTTAATGATACTAATTTGGTGTTGTAAATGTTGGTAATTTATTTTT
TTTCTTCTTATCGAACTTGGTTGAGTTTGATTTGGGACAAATCCAAAATAACTTATAATATGAG
ATAGAGGGATTATATCATTTCTTTTTTTCCTAATTACTTTAAATTTTACAATTGAAAATTTACA
TTTTTTTAATATAGGAGGTGTATGTACATGCTAAGGTAATTTGCTAGATATTTTAGTTAAGGAC
TAAGATCATGAGGTTGATTAATTACTGTTAGGACACAATAATTGGAGGGAGATGGTGTTGACGC
AGAGGAAGTGACGGCGGTATGGCTTGGATTTGGACATATTTTGGACATTTTCAAACTTCAGGGG
AAGAAGAGTGGACTTAACAATTGCATTAACATAATATGAATAAACCCACATGGATTATACTAAT
GATGATTTACAGTGAATCCAAAATTAAATAATGGACGTCTCAGAGCTGTCCTTGTGATTTTTTG
CCAATTTAATGGAAATTTGCAGAATCAAACAAAAGGAAAAAAATATTAGTTTTTCTACTTTCTT
GTATTATACAGTTGTATAGAAAGAGGTTGTGGCACACCAATCATAACTGTAGAAGTGTATGGCA
TCTTATATGACAGTGACGTGCATTATAGCGATGCGTGTATATGAAACCAGCTGTTAAGGTTGAA
AAAAAGTTTACTATCTTTTGGACTGATCATGTCCGGTTATGATTAGCATTCAGCAGGTTTTAAT
TAAGTAAATCAGGCAAAAAAAGGACCTAATCCCATTTACTAACTATTCAATTTACGCTTCCTAG
GAACGGATGAATTTTGCCTTTTGTTTTTTTAGAGATCGAACTGATTCCTGCGAGAATTCTGTAG
AACTCCTGTATATCAAAGGAGCCCTGCAATCTGCAAATAAAGTACATATGTCAATGATTTTCTT
GAACAGTATATAGCATGAGAACCTTGTAATCCTTTAGTACTAGCATGGTACAAGGAAATATTTG
TTCAATGCAATGGCAAAGTTGTAATTTTATTACACTTTCATATCCATTTTGCGTTTTTGCTATC
AAACTGAGGACCAACAAGATCAAAGTACCAGAGAGTTCTTGCCTGAAACGTGGCCAGCTTGGTA
CAGACTCCATTCAGTATACGGTTAAAACCTGAAACTTGGATGCATCTCCCTTTGTTTATATTTT
TTGTCAGTAGAGGACAGCAAGTTACTTTTTATTTGTTTGGATTGTACAATACTCTTAATGTGTG
TTTAGTTTACATCAAATTTGAAAGTTTGATTGAAATTGAAACGACAAAGGTTAGAAATTTTTGT
GTAGAAAAGTTTTGATGTGATGGAAAAGTTAGAAGTTTGAAGAAAAAGTTAGGAACTAAAACAG
GCCTTAGTTCACTTGTATTTTCTATTTTGGGTTTGAACTGCCATACTCACTGCAAGGGGAGTTC
TGATTTAAATTTATAGATTCATCTCTATTTATTTATCAAAATTAAAGAAAAGAATTATACATAG
TATTAACCTGCACGTATCAACCCCCTAGGATATACACACACACCCCAAGTGTACAAAAAAAATA
AAATTTTGAAATTCTTCATATTCTGTTCTTCCTCAATGACCGAAAAGGGCCTGAAATCAAATGA
ATTCCCTTCTGTTGGCCAGATCTGTTAGTGATTCACCTTCACCATTTCCTTTGGGAAACCAAAA
TAATCTTAATTTTTCATAACCGCGAATTTTTAGCCTTTTTGGGCCTGACAACGCTGGCGGTCAG
CTTGATCCTAGGAATGGAAAATTCGCCACTTATCACTTTAGAAGCAACGATCTCGTTTGCAGCA
TCGGTGAAGTGGACCCCATCCCAGCTGATGAACTTCTCACCAAGCTTACACAGGTCCTTGTCAT
TGGCCGTGCAGCTTTTCTTCGGATCATAGTTGTAAGGGGGCCCTCCATGTCCACAACATGTCAT
CAATGGCTTCTCAATCCCTGTACAAGAATTATATTAGATGCACAAATCTAGATATATTTTTAAG
GGGTTACAGCTGATTATAAGCCATAAAGGTTTATTAGCCATCCAAAAATAATTTATGAGTAAAA
CTTTTGTATAAATGCCCTTAGCGACTTAAAAGCAGATGCTGAAAAAGAAACTAGGTTGAGAAAA
CATCAAATTAACTTCAAAACTAAATTTTTAAATTTAAATTTTGGCAGCAACTTATAAGCCATAG
GGCAAACATGAGGCCCCTTGCTTGAACTGACAAATAATATTAGTTATAGACCAGTCATTGTTTT
GAAAGCCTGTAGTTTTCGGGATGTCGAAATCACTAGGTCCAGATGTACCATTTTAGTTGCTGAA
TGTTTGGCTCATAGAATTGACAGGTTAACTTACCGTGTTTCGTGTGGTTGGCAACAAGATCATA
CTTGATGGCGAACATGTCCACGAAGACGATCGTCGAGCTTGCGAATTGCAAGCGCAGATCATCG
CAGGTTTCGCTCAGCAACTTGTTGAACCTCTTGGCAACATTGTTGATTCTTGTGATGCAGCCAT
GCTCGTCGAGATCACGATCAATTTCCCCCCTCGTAGCAAGCTTCTGAGGCAGGCAACCCAATGC
ACCCGTTCCATGTATCCAAAACTTCTTGGCCCCATTCTTATGCAAAGTCTGCAGTTTGGCAAGG
GTTCAATGATCATTTCTCTGAATAACTGATAGTATTTTTTTTTTACTTCAGAACTTACTGGTTT
AAGGGAGAAGTTTAGATAAAAATTTGAGCTGTTTACTGAGAATAATTTATCATATGTGCTACTG
TTTTATTGACTTGAACCAAATGTACCTCAATGGCTTTCCTGATTTCAGCAACTATGGGAGGAAG
CTTTCGAAGAATTTCATCATAGGACAAGTGCAAAACGCCCATTAAATCATTGTGCCCTATGTCC
ATGGTATAGAGGGCATTTTCAAACCCTTTGCTATCAATTGGGGCATCCTCACCTGGATGACATT
CACCAAAATTAAGCAACTTTGTCACTCCAAAACAATGCAAATAAGTCGGAAACCCAATTAATTG
CGCAAAAAAGGAACACTTTGCTTAGAACAAAATGTCACCAAATTAAGATCAAACCGACCTCTTT
CGATGGACTCCAAGCATCTCTCCTTGAAAAATATGAACTGATCAAGCTGCACATCAAGCGAAAA
TGTGGTTTCTCCCGGTGTTGCCGTCGAGCCGGCGATGGCGAAATTCACACCGTTGTTGTAATCC
GCTCCCAGTGGCCTCATGAACGGGCTGAGGTGGTGAGTGTTCAAGCTCTCAC
Conservation Information
Conserved circRNAs osi_circ_015933
PMCS 0.688882679
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015