Detail information of Os03g0223700_circ_g.5


General Information
CircRNA Name Os03g0223700_circ_g.5
ID in PlantcircBase osa_circ_018600
Alias NA
Organism Oryza sativa
Position chr3: 6471614-6473268  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0223700
Parent gene annotation Armadillo-like helical domain containing protein. (Os03t0223700-
01)
Parent gene strand -
Alternative splicing Os03g0223700_circ_g.2 Os03g0223700_circ_g.3 Os03g0223700_circ_g.4 Os03g0223700_circ_g.6 Os03g0223700_circ_g.7
Support reads 4
Tissues shoot, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0223700-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTGCAGTTTCAAAGGCTTTGTAAGAGAGCTCACCGCATCTGAAGGATCAGAGAGTGCATTTAG
GAGTGGATCGAAGATGTCATTCAAGTATGCCAAGAActgcaaacgtaagtaagcaaatacagga
gtctctaaaagacggattaatttgtctagttgcacgagaaacttcacatttatatcttcctctc
ccaaagac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCAAACGTAAGTAAGCAAATACAGGAGTCTCTAAAAGACGGATTAATTTGTCTAGTTGCACG
AGAAACTTCACATTTATATCTTCCTCTCCCAAAGACTGGATAACAGAAATTGCATGATTGTATG
CCTACACATGTTGGAAAAGAACATCCAAAGATCAGTGCCCAAGTAAGAAACACAAACTGCAAAA
GTTAGAAGTTGGTCATTACCTGCGCAAGTAGACACAAGCTTATTGTAGCCATCGGAGAGTGACA
CCAAGAAGCGTATAAAGATTGAAATAAGTCCTTGCCACAAGAATCAACCAATGTTTTCTTAAGA
AGAGAACGCAGCTCAGCAAGTTCGGTTGATGTGAGCAAAATTAAATTCAAGGCCTACAAGAAAT
TTAACAGTTACGGAATGTCTACAGTTAAATTAGGCAGTAGTATAGTGTTGCAACAGTGGGGGAT
ACCTGAACCATGGTGGATGCAAATTCAAGGTCACCTTCGGTCTCAAGAATAGTAGAGAACTCTC
GATAAACTTTTTCAGCACCCAAAAGAATACAAAGTCGACGAACTATCAATGCGCCACGTCTGTA
TAAGTATGTCATAAACCATTGTTTGGTAAGCAATTTATGTAATAGTGAACTGTGTAACCCTAAA
AGTAGGACTAATAACAAAGAAACATATACTATGTAATCAACTTTTGAGTGGGGAAATGTGCATA
CTTCTCCAGTAGAACATGATTGTTGTGAAAAGTGTGGATTAAGTAGGATACAAGATGATGAAAG
TGATGAGACTCTTCAGCTATGCGCGCATGAACTTCCAACACTAATAGAACAACCTGCACATGAA
AAAATGTGATGACAATAGCCAAGCTCTCTGATACGGTACAACAAATTTATTGAATTAGCAAAAT
ATTAATGGTCAATAACCCTATAAAGCCATCAGCCCATCAGTCATTTATTGAACTATGATGCAAA
GGGTTAGCATGATTTTTCCTTTTTGGTGGCAGTGGTGGTTGGGGGGATGTGAAGGTTATTTATA
GCTATCATATAATTGTGTCAAGCCCAGGTGACAATGGAGAAGTAGACTTTATTAAGATTTATGA
AACAAAGGATATTACAAATCCAATGGCAAGAACAGCAGGTGTTTTTCTTTTTGGAAGGGAAACA
ACAGCAAATCTATCCTTGCCAACAGCAAGCGAAAATGGATTCAATCATTGCCAACGCCAACACT
GAAAAGCATCCCATTATGGTTTCTATACTGCAAGCGCAATCATGTCTGTGTAATTGTATATGTT
TTGGAAAGCCAAACACTCAGATGGCTGATATAGGGCCATGAGGGTTACTTATAAAAAAACATTT
GAAGGGATGAAGTAACCCCTTGGTATATTATCCATGGAAGAAAGAATAGGCCCACGATGCACTA
AATTTGCACCAAGTCAAAAAATAAATTAGCACACACTGTTCTCACTAAGTTAAACCTTCATTGA
TTTTATTTCAAGACTTGGTCACAGATCATTTGTATAACAAATAAAGCAATTAATCAGCTGCTCA
CAGAAAGTTGTAATGAAAAGGTGCAGTTTCAAAGGCTTTGTAAGAGAGCTCACCGCATCTGAAG
GATCAGAGAGTGCATTTAGGAGTGGATCGAAGATGTCATTCAAGTATGCCAAGAA
Conservation Information
Conserved circRNAs osi_circ_014074
PMCS 0.137215141
Functional Information
Coding potential Y
Potential coding position 6472175-6471717(+)
6472074-6471616(-)
Potential amino acid sequence MRHVSPVEHDCCEKCGLSRIQDDESDETLQLCAHELPTLIEQPHLKDQRVHLGVDRRCHSSMPR
TANVSKQIQESLKDGLICLVARETSHLYLPLPKTG*(+)
MVQALNLILLTSTELAELRSLLKKTLVDSCGKDLFQSLYASWCHSPMATISLCLLAQAYNHAIS
VIQSLGEEDINVKFLVQLDKLIRLLETPVFAYLRLQFLAYLNDIFDPLLNALSDPSDAVVLLVL
EVHARIAEESHHFHHLVSYLIHTFHNNHVLLEKRGALIVRRLCILLGAEKVYREFSTILETEGD
LEFASTMVQALNLILLTSTELAELRSLLKKTLVDSCGKDLFQSLYASWCHSPMATISLCLLAQA
YNHAISVIQSLGEEDINVKFLVQLDKLIRLLETPVFAYLRLQFLAYLNDIFDPLLNALSDPSDA
VVLLVLEVHARIAEESHHFHHLVSYLIHTFHNNHVLLEKRGALIVRRLCILLGAEKVYREFSTI
LETEGDLEFASTMVQALNLILLTSTELAELRSLLKKTLVDSCGKDLFQSLYASWCHSPMATISL
CLLAQAYNHAISVIQSLGEEDINVKFLVQLDKLIRLLETPVFAYLRLQFLAYLNDIFDPLLNAL
SDPSDAVVLLVLEVHARIAEESHHFHHLVSYLIHTFHNNHVLLEKRGALIVRRLCILLGAEKVY
REFSTILETEGDLEFASTMVQALNLILLTSTELAELRSLLKKTLVDSCGKDLFQSLYASWCHSP
MATISLCLLAQAYNHAISVIQSLGEEDINVKFLVQLDKLIRLLETPVFAYLRLQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017