Detail information of Os03g0223700_circ_g.7


General Information
CircRNA Name Os03g0223700_circ_g.7
ID in PlantcircBase osa_circ_018602
Alias NA
Organism Oryza sativa
Position chr3: 6472474-6473202  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os03g0223700
Parent gene annotation Armadillo-like helical domain containing protein. (Os03t0223700-
01)
Parent gene strand -
Alternative splicing Os03g0223700_circ_g.2 Os03g0223700_circ_g.3 Os03g0223700_circ_g.4 Os03g0223700_circ_g.5 Os03g0223700_circ_g.6
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CG-TC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTCACAGATCATTTGTATAACAAATAAAGCAATTAATCAGCTGCTCACAGAAAGTTGTAATGAA
AAGGTGCAGTTTCAAAGGCTTTGTAAGAGAGCTCACtgatacggtacaacaaatttattgaatt
agcaaaatattaatggtcaataaccctataaagccatcagcccatcagtcatttattgaactat
gatgcaaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 729
Transcript exons: 6472474-6473202
TGATACGGTACAACAAATTTATTGAATTAGCAAAATATTAATGGTCAATAACCCTATAAAGCCA
TCAGCCCATCAGTCATTTATTGAACTATGATGCAAAGGGTTAGCATGATTTTTCCTTTTTGGTG
GCAGTGGTGGTTGGGGGGATGTGAAGGTTATTTATAGCTATCATATAATTGTGTCAAGCCCAGG
TGACAATGGAGAAGTAGACTTTATTAAGATTTATGAAACAAAGGATATTACAAATCCAATGGCA
AGAACAGCAGGTGTTTTTCTTTTTGGAAGGGAAACAACAGCAAATCTATCCTTGCCAACAGCAA
GCGAAAATGGATTCAATCATTGCCAACGCCAACACTGAAAAGCATCCCATTATGGTTTCTATAC
TGCAAGCGCAATCATGTCTGTGTAATTGTATATGTTTTGGAAAGCCAAACACTCAGATGGCTGA
TATAGGGCCATGAGGGTTACTTATAAAAAAACATTTGAAGGGATGAAGTAACCCCTTGGTATAT
TATCCATGGAAGAAAGAATAGGCCCACGATGCACTAAATTTGCACCAAGTCAAAAAATAAATTA
GCACACACTGTTCTCACTAAGTTAAACCTTCATTGATTTTATTTCAAGACTTGGTCACAGATCA
TTTGTATAACAAATAAAGCAATTAATCAGCTGCTCACAGAAAGTTGTAATGAAAAGGTGCAGTT
TCAAAGGCTTTGTAAGAGAGCTCAC

Genomic sequence TGATACGGTACAACAAATTTATTGAATTAGCAAAATATTAATGGTCAATAACCCTATAAAGCCA
TCAGCCCATCAGTCATTTATTGAACTATGATGCAAAGGGTTAGCATGATTTTTCCTTTTTGGTG
GCAGTGGTGGTTGGGGGGATGTGAAGGTTATTTATAGCTATCATATAATTGTGTCAAGCCCAGG
TGACAATGGAGAAGTAGACTTTATTAAGATTTATGAAACAAAGGATATTACAAATCCAATGGCA
AGAACAGCAGGTGTTTTTCTTTTTGGAAGGGAAACAACAGCAAATCTATCCTTGCCAACAGCAA
GCGAAAATGGATTCAATCATTGCCAACGCCAACACTGAAAAGCATCCCATTATGGTTTCTATAC
TGCAAGCGCAATCATGTCTGTGTAATTGTATATGTTTTGGAAAGCCAAACACTCAGATGGCTGA
TATAGGGCCATGAGGGTTACTTATAAAAAAACATTTGAAGGGATGAAGTAACCCCTTGGTATAT
TATCCATGGAAGAAAGAATAGGCCCACGATGCACTAAATTTGCACCAAGTCAAAAAATAAATTA
GCACACACTGTTCTCACTAAGTTAAACCTTCATTGATTTTATTTCAAGACTTGGTCACAGATCA
TTTGTATAACAAATAAAGCAATTAATCAGCTGCTCACAGAAAGTTGTAATGAAAAGGTGCAGTT
TCAAAGGCTTTGTAAGAGAGCTCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.327800469
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017