Detail information of Os06g0725900_circ_g.1


General Information
CircRNA Name Os06g0725900_circ_g.1
ID in PlantcircBase osa_circ_032421
Alias Os_ciR10659
Organism Oryza sativa
Position chr6: 30870709-30875324  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os06g0725900
Parent gene annotation Similar to Cell division protein ftsH homolog, chloroplast precu
rsor (EC 3.4.24.-) (DS9). (Os06t0725900-01);Similar to cDNA clon
e:J013001F19, full insert sequence. (Os06t0725900-02)
Parent gene strand -
Alternative splicing Os06g0725900_circ_g.2 Os06g0725900_circ_g.3 Os06g0725900_circ_g.4 Os06g0725900_circ_g.5 Os06g0725900_circ_g.6
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os06t0725900-01:2
Os06t0725900-02:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCTGCTGGCCCAAGAAAGGATTTCCACCAGGTCCACCAATCGCAACTTGCCCGATCTTCTTGC
TGAATCCAAATCTTTCAACCATTTGTCTTGCAACACctgagcaagcttgtggaggatgtcgatg
tgtgtcgtgatgatctgcgttgctcttgagtaggccttctccacgagctccctcacctcagcat
ccacaaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGAGCAAGCTTGTGGAGGATGTCGATGTGTGTCGTGATGATCTGCGTTGCTCTTGAGTAGGCC
TTCTCCACGAGCTCCCTCACCTCAGCATCCACAACATCCGCGGTGGCCATCGAGTAGTCCTTCT
GGCTCGACATCTGCAACCAAAGGATATGAAAAATATCATGCTACCATTCACACAGATACTACGA
ATTGCCGATAGAAATTCCGAGAAGCAAAACCAACGCAGGTTAGACAGATTGCCACGTCTGGCAG
GGCAACCAGTAATCTACTCACAGCCACACAAAAGAGTTGTGTGCCTAACTGGCACTACTCTTTG
ATTTTGTCACTGCTTTTATAGACCAAGTGTGTTGATGATGACAACATTGGCAGTATATGACTAT
GTGAGTGGCAAAGTGTAGCGCCCGTTCCGTCGTGGCGCCTAGCGGGAAAATTATCTCCGAAAAA
CCCTAATTGCGAAATTTGTTTCTTTGATTGTTGTCTAGTGTCCGTGCCATCTCAAGATCTCAAT
CCCCGATCTATCGTCGAGTTCAATTCCGAATCCAAATCCTTCCAAATCGAATCCCTCCGCAAAA
GTCTAGTTTGCCTCCCCCAGGTTCGATGGGCCGAATTCCGCTCGGCCCATCTCCTCCCCGGCCC
CCTCTCTCCCGGGCGCTCTCTCTCTCTCTCTCGCTCCCTCCCCACCCCGGCGCGTTTTTCCCCC
CGCTCGCTGCTCGCGCGTGCGAGAGCCGCGCCGAGCGCCCCCTCCTCTCGCGCGAGCTCCCCGC
TCGCAAAGCCGGCCCCGCGCGCCGTTGCTCGCGCGCGCGCCCGCGTGGTTTCCCGCCCGAGCCG
CGTTGTCTGCGCCGTCCGCGTCGCCGGTCCCGCTGCCCAGCCGCGCCGCCCGTTGCTTCCCGCG
CGCGCGTGCCGAGTGGCCGACCGCCTGGTCGCCGCCGCCGTCACCCCCCCCCTGCCGCGCCAGC
CCGCGCCTGTCGCCCGTGTCGTCGCGCCGCTCCAAACCATCCCACCGTCATCGCCGTCGTCATC
GCCCGGCCCCCGCCACTCCGCGCGCTAGCCTCCAAGGGGCGGAGGCAGAGAGCCCCTCTCTCCC
TGCCGAGTCTCCCCGCTCCCTCCTCCTTTTCCCGAATCGGCAAAGGGGCGAGCCCCCTTTCTCT
CCCTCCTTTTCCTCTTTTTCTCCCCTTTTTCCCCTCTCGCCGGCGTCACCTCCTGTCGCCGCTT
TGGACGCTAGCCGGAGCGCCAGCTCGTCGGCTTGACCGCCCATGTCGGTTCCCCTCTCTCAAAC
CGACATTGCCGCCCATTTAAACCCGTCTTCCCCCTCCCTTCCTTTCCTCTCCCATTCGCCTCCT
CACCGTTGCCGCCGCTCCCGTGCTCTGCCTCGCCTCCGCCGTCCATCGCCAAGCGCCGGGAGAG
CCGGTGCGTTCGTGGACGCGGAAGGGGACTCCGGGCGCGCCCTCTTCTTCCTCTTCCTCGGCCC
GAGGCCGGAGAGATCACTCCCGCGCCGTCGGCCTCTCGTCACTGCGCCCCGTCCCGCACGGTAG
TGTCTCTCTCCGTTCTTCCTCCTCGCTCCATCTCCTCCCCCTAGCTTTCGGTAGTAGCTTGAGT
AGACTCCCCGTAGTTAGCCGGCGCCGCCCCGACCGTTGCCGTCGCTCGCCGTGTGCTCGCCGCC
GTCGCCGCCCGAGCTCCGTAGCACCCGCTCGTCGCCGGCCTCGCTCGGCGTAGTTCCGCCCAAT
CCGACGCTAGCGTCGAGTTCCCGAAGCCGCGTAGATGCTCTCACCGCCGGGAATCGACCTCTCG
TGACCTCGTCGCCGTTTCCCTCTTCTCCCGCCGCCGGTTGCCGCCGCCGCAATCCGCCGCCGTC
GAGCAACCTCCGGCGAATCCGAGCCGTTGGCTCGCCTCCCCTTGTCACGTGCAACCGTCCGGTG
TGCTCGCTGTTGCCCGTATCGCCGTGGTTCGCTCCGCCGCTCGCCGCCGCCGCCCGCCGTCCAT
TCGCGGCCGGGTCGTCGTCTACCTCCCGCCGGCCCGCGTGGCAGCCACGTAGGCGCCACGTCGG
CGCCAGCTCAGCCAGACCGGGTCGGGCCGACCCCGGTCGGTCCCTCCGCGTGCGCGCGATCCAC
CGCGAGCCGTGAGGCTGCGCGTGGGCCCGCCGCACCTGCGTCCACCGCGGACCGCGCGCATGCA
CCGCGTCCCTTCCCCGCCCGCGCGCGTGCGTCGCGTGCTCCCTCCGCACGGTGAGCCGAGCCGC
TGACAAGCGGGTCCCACCCGGGACCGCGCGTGGTGAGCCCGGTCCACCGGCTCTCTCTCTCCTC
CCTCCCGCGCGCGCGCGAGTTTGGGCCGCCTTGGGCCGGCCGGCCCATTTAGCTCGGCCGGACC
GCTCCATTTCTCTTGGGCCGCGCCCTAGCCGTCCGAGAAAAGTCTATATTCCCTCCCTCCCTTC
TTTTCTTTTTCTTTTCCAAAAAGGATTTAATTAAATCCTTTTCCTTTAGATCAAAAATTCAATA
ATTTTAGAAATTCAATATCTTCCCAACCGTAAATCCGTTTGACTCCGTTCAACTTCCAAAATTC
CTCAAATCTCGAGATCTATCTAATGGCACGCTTAGAGGTCATTAATAGGGCTTTATTTTCGCCG
TTTGTTGAGTTGTTCCGTTTCGCGTATAGTTTCAGAGCCCGAAGACCCGCAGTGCGAGGATTTC
GAGGATCAAGCTCCAGATCTCGAGCAAGGCAAGCCACCTTTGAACATCTTGAGCCTATATTTGA
AATTTAATTATGTTGCTTGAAAAATATTATGCACTGATAGGATCACACTTAATCCGTTGTCCCG
TCTGCAAGGCAGATTGGCGGACTTACCTAATTTGCTGCATTAGATCCCCCCCTTTGTTAATTGT
TATATCATGTCCCCTTGTAACCATCTAGTTGCGTCTCGATATCCGTGCATCCTGCGCGAGTATC
GACGGACGCCTTCAAACTTAAAATCTGAAAAACAACTTGGGTAAAACTTAGGTTTACAAAAGAC
TTGGAAAACCCGACACCTGGGTCGGTGCTTGCGAACTAAATGAATTTCCAAAACCGCGGACCGG
GGAACGTACCGGGTGTACGGTTTCCCGCTCTTGCACTTAAGGACCGTTTCCTTGGAATTTCATC
CGAACATAAGACAAGTACGACCACATGGGTGGAATGGGATGCCCCTGGCTGAGTAAATTGCTAA
TCGGGGGAGCCTTGATGCCGAGAGACATGTGGATTCGCCGGGGTGGTGTCGGGGAGGACCCCTG
GGCTTCCTGGCACAGTATGGTCTGGGACCTAACCTGTTGTTGGTCTGGGACCCCTCTCGTCGGC
ATATGGTAAACCTGTGTCGGCTTTCGAAATGCCTTGTCATGAAAGCTTGGAGGTCTCCCGACGT
GGCTGATCCCCACGGGCTGGATGATCCGGGTTAGTAATGTCATGTGGGTAAAGTGTACCCCCTC
TGCAGAGGTCATTAAACTGTTCGAACAGCCGTGCCCACGGTCATGGGCGGATGTGAGGTGATTC
CTAGCGTAGTTTTGTTTGACTACTGCTTGTGAAATTGCTGTTGTGAAAAGGGGTTCGATGTTTG
AAAAATCTGCAGCTGATGAGATCAGCTAGGCCCGGGTGGCCGTTTGAAAAGTTGTTGGCCCGGG
TGGCCGTTTGAAAAGCTGTTGGCCGGGTGCCAACCTTGTTGCAATCCTAAAGACTGACACATTG
CACATACTCCGACCGGACGAGACGCACTGTCTCATCCGTGTCGTTTGAGAAGCACTCACCTAGT
TGTTTTAGAAAAAGAGTTCAAATAAAATCAATTGCAAAAACAACAGCCTTTCCTTGAAGCCTGC
ATTAAACACTTATTTTCCCCTGGCTTGCTGAGTACTCCCGTACTCACCCTTGCTCTATATAAAT
AATCCCCCCCCCCCCCCAGTTGCTGAAGAAGATGAAGTGGATCCTGCTGACGAGGAGTTCTTCC
AGGAGCAAGTCGGCTACGATGAGTTTTAGGGTTTCGGCCTAGTTCCCAAGTCGCGCCTGTGATG
ATTGGTCCAAGTCCTGGCTTCCGCTTTCCTTTTGTAATGCAGTTGTGAGCTCGGGATCTGTCCG
CAGCCCAACATGACTGTACTTCTACTCTATAATAAAGAGACCTCTGTTGCTGTGATACTCTGTC
TCCCTGTGATACCAGCACTGTTTCCTAGGACTGGTATCGATTAACAGGTTAATTTGGAGCGTCA
CGGGCTAGTTCCGGTCGGGACTAGTTCGGGGCGTGACACAAAGTTACAGGAAAGACTAGACTAT
ACTATTCATCAAGGTTAAAGGAACAAACTGAACTTCAGGAAATGGACCTTCCCCATAGGACAGT
AGACACTTCAGAACACTAGATGCACACTAGGGCAAGAAAGGCTGGGCTCATATGTTGTCATTGT
TGAAGTTTGCACGTCTAGTTCTTCAGTTAATTTTCACAGACTCTGCTTCTAGGGTAAGAAGTTT
TTCTTCTTTGATAGTCTATTTCAGTTATAGTGATTTACCTGCTGGCCCAAGAAAGGATTTCCAC
CAGGTCCACCAATCGCAACTTGCCCGATCTTCTTGCTGAATCCAAATCTTTCAACCATTTGTCT
TGCAACAC
Conservation Information
Conserved circRNAs NA
PMCS 0.20289853
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015