Detail information of Os06g0725900_circ_g.2


General Information
CircRNA Name Os06g0725900_circ_g.2
ID in PlantcircBase osa_circ_032422
Alias NA
Organism Oryza sativa
Position chr6: 30870770-30875324  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method circRNA_finder, find_circ
Parent gene Os06g0725900
Parent gene annotation Similar to Cell division protein ftsH homolog, chloroplast precu
rsor (EC 3.4.24.-) (DS9). (Os06t0725900-01);Similar to cDNA clon
e:J013001F19, full insert sequence. (Os06t0725900-02)
Parent gene strand -
Alternative splicing Os06g0725900_circ_g.1 Os06g0725900_circ_g.3 Os06g0725900_circ_g.4 Os06g0725900_circ_g.5 Os06g0725900_circ_g.6
Support reads 2
Tissues pistil
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os06t0725900-02:2
Os06t0725900-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCTGCTGGCCCAAGAAAGGATTTCCACCAGGTCCACCAATCGCAACTTGCCCGATCTTCTTGC
TGAATCCAAATCTTTCAACCATTTGTCTTGCAACACgccttctccacgagctccctcacctcag
catccacaacatccgcggtggccatcgagtagtccttctggctcgacatctgcaaccaaaggat
atgaaaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCCTTCTCCACGAGCTCCCTCACCTCAGCATCCACAACATCCGCGGTGGCCATCGAGTAGTCCT
TCTGGCTCGACATCTGCAACCAAAGGATATGAAAAATATCATGCTACCATTCACACAGATACTA
CGAATTGCCGATAGAAATTCCGAGAAGCAAAACCAACGCAGGTTAGACAGATTGCCACGTCTGG
CAGGGCAACCAGTAATCTACTCACAGCCACACAAAAGAGTTGTGTGCCTAACTGGCACTACTCT
TTGATTTTGTCACTGCTTTTATAGACCAAGTGTGTTGATGATGACAACATTGGCAGTATATGAC
TATGTGAGTGGCAAAGTGTAGCGCCCGTTCCGTCGTGGCGCCTAGCGGGAAAATTATCTCCGAA
AAACCCTAATTGCGAAATTTGTTTCTTTGATTGTTGTCTAGTGTCCGTGCCATCTCAAGATCTC
AATCCCCGATCTATCGTCGAGTTCAATTCCGAATCCAAATCCTTCCAAATCGAATCCCTCCGCA
AAAGTCTAGTTTGCCTCCCCCAGGTTCGATGGGCCGAATTCCGCTCGGCCCATCTCCTCCCCGG
CCCCCTCTCTCCCGGGCGCTCTCTCTCTCTCTCTCGCTCCCTCCCCACCCCGGCGCGTTTTTCC
CCCCGCTCGCTGCTCGCGCGTGCGAGAGCCGCGCCGAGCGCCCCCTCCTCTCGCGCGAGCTCCC
CGCTCGCAAAGCCGGCCCCGCGCGCCGTTGCTCGCGCGCGCGCCCGCGTGGTTTCCCGCCCGAG
CCGCGTTGTCTGCGCCGTCCGCGTCGCCGGTCCCGCTGCCCAGCCGCGCCGCCCGTTGCTTCCC
GCGCGCGCGTGCCGAGTGGCCGACCGCCTGGTCGCCGCCGCCGTCACCCCCCCCCTGCCGCGCC
AGCCCGCGCCTGTCGCCCGTGTCGTCGCGCCGCTCCAAACCATCCCACCGTCATCGCCGTCGTC
ATCGCCCGGCCCCCGCCACTCCGCGCGCTAGCCTCCAAGGGGCGGAGGCAGAGAGCCCCTCTCT
CCCTGCCGAGTCTCCCCGCTCCCTCCTCCTTTTCCCGAATCGGCAAAGGGGCGAGCCCCCTTTC
TCTCCCTCCTTTTCCTCTTTTTCTCCCCTTTTTCCCCTCTCGCCGGCGTCACCTCCTGTCGCCG
CTTTGGACGCTAGCCGGAGCGCCAGCTCGTCGGCTTGACCGCCCATGTCGGTTCCCCTCTCTCA
AACCGACATTGCCGCCCATTTAAACCCGTCTTCCCCCTCCCTTCCTTTCCTCTCCCATTCGCCT
CCTCACCGTTGCCGCCGCTCCCGTGCTCTGCCTCGCCTCCGCCGTCCATCGCCAAGCGCCGGGA
GAGCCGGTGCGTTCGTGGACGCGGAAGGGGACTCCGGGCGCGCCCTCTTCTTCCTCTTCCTCGG
CCCGAGGCCGGAGAGATCACTCCCGCGCCGTCGGCCTCTCGTCACTGCGCCCCGTCCCGCACGG
TAGTGTCTCTCTCCGTTCTTCCTCCTCGCTCCATCTCCTCCCCCTAGCTTTCGGTAGTAGCTTG
AGTAGACTCCCCGTAGTTAGCCGGCGCCGCCCCGACCGTTGCCGTCGCTCGCCGTGTGCTCGCC
GCCGTCGCCGCCCGAGCTCCGTAGCACCCGCTCGTCGCCGGCCTCGCTCGGCGTAGTTCCGCCC
AATCCGACGCTAGCGTCGAGTTCCCGAAGCCGCGTAGATGCTCTCACCGCCGGGAATCGACCTC
TCGTGACCTCGTCGCCGTTTCCCTCTTCTCCCGCCGCCGGTTGCCGCCGCCGCAATCCGCCGCC
GTCGAGCAACCTCCGGCGAATCCGAGCCGTTGGCTCGCCTCCCCTTGTCACGTGCAACCGTCCG
GTGTGCTCGCTGTTGCCCGTATCGCCGTGGTTCGCTCCGCCGCTCGCCGCCGCCGCCCGCCGTC
CATTCGCGGCCGGGTCGTCGTCTACCTCCCGCCGGCCCGCGTGGCAGCCACGTAGGCGCCACGT
CGGCGCCAGCTCAGCCAGACCGGGTCGGGCCGACCCCGGTCGGTCCCTCCGCGTGCGCGCGATC
CACCGCGAGCCGTGAGGCTGCGCGTGGGCCCGCCGCACCTGCGTCCACCGCGGACCGCGCGCAT
GCACCGCGTCCCTTCCCCGCCCGCGCGCGTGCGTCGCGTGCTCCCTCCGCACGGTGAGCCGAGC
CGCTGACAAGCGGGTCCCACCCGGGACCGCGCGTGGTGAGCCCGGTCCACCGGCTCTCTCTCTC
CTCCCTCCCGCGCGCGCGCGAGTTTGGGCCGCCTTGGGCCGGCCGGCCCATTTAGCTCGGCCGG
ACCGCTCCATTTCTCTTGGGCCGCGCCCTAGCCGTCCGAGAAAAGTCTATATTCCCTCCCTCCC
TTCTTTTCTTTTTCTTTTCCAAAAAGGATTTAATTAAATCCTTTTCCTTTAGATCAAAAATTCA
ATAATTTTAGAAATTCAATATCTTCCCAACCGTAAATCCGTTTGACTCCGTTCAACTTCCAAAA
TTCCTCAAATCTCGAGATCTATCTAATGGCACGCTTAGAGGTCATTAATAGGGCTTTATTTTCG
CCGTTTGTTGAGTTGTTCCGTTTCGCGTATAGTTTCAGAGCCCGAAGACCCGCAGTGCGAGGAT
TTCGAGGATCAAGCTCCAGATCTCGAGCAAGGCAAGCCACCTTTGAACATCTTGAGCCTATATT
TGAAATTTAATTATGTTGCTTGAAAAATATTATGCACTGATAGGATCACACTTAATCCGTTGTC
CCGTCTGCAAGGCAGATTGGCGGACTTACCTAATTTGCTGCATTAGATCCCCCCCTTTGTTAAT
TGTTATATCATGTCCCCTTGTAACCATCTAGTTGCGTCTCGATATCCGTGCATCCTGCGCGAGT
ATCGACGGACGCCTTCAAACTTAAAATCTGAAAAACAACTTGGGTAAAACTTAGGTTTACAAAA
GACTTGGAAAACCCGACACCTGGGTCGGTGCTTGCGAACTAAATGAATTTCCAAAACCGCGGAC
CGGGGAACGTACCGGGTGTACGGTTTCCCGCTCTTGCACTTAAGGACCGTTTCCTTGGAATTTC
ATCCGAACATAAGACAAGTACGACCACATGGGTGGAATGGGATGCCCCTGGCTGAGTAAATTGC
TAATCGGGGGAGCCTTGATGCCGAGAGACATGTGGATTCGCCGGGGTGGTGTCGGGGAGGACCC
CTGGGCTTCCTGGCACAGTATGGTCTGGGACCTAACCTGTTGTTGGTCTGGGACCCCTCTCGTC
GGCATATGGTAAACCTGTGTCGGCTTTCGAAATGCCTTGTCATGAAAGCTTGGAGGTCTCCCGA
CGTGGCTGATCCCCACGGGCTGGATGATCCGGGTTAGTAATGTCATGTGGGTAAAGTGTACCCC
CTCTGCAGAGGTCATTAAACTGTTCGAACAGCCGTGCCCACGGTCATGGGCGGATGTGAGGTGA
TTCCTAGCGTAGTTTTGTTTGACTACTGCTTGTGAAATTGCTGTTGTGAAAAGGGGTTCGATGT
TTGAAAAATCTGCAGCTGATGAGATCAGCTAGGCCCGGGTGGCCGTTTGAAAAGTTGTTGGCCC
GGGTGGCCGTTTGAAAAGCTGTTGGCCGGGTGCCAACCTTGTTGCAATCCTAAAGACTGACACA
TTGCACATACTCCGACCGGACGAGACGCACTGTCTCATCCGTGTCGTTTGAGAAGCACTCACCT
AGTTGTTTTAGAAAAAGAGTTCAAATAAAATCAATTGCAAAAACAACAGCCTTTCCTTGAAGCC
TGCATTAAACACTTATTTTCCCCTGGCTTGCTGAGTACTCCCGTACTCACCCTTGCTCTATATA
AATAATCCCCCCCCCCCCCCAGTTGCTGAAGAAGATGAAGTGGATCCTGCTGACGAGGAGTTCT
TCCAGGAGCAAGTCGGCTACGATGAGTTTTAGGGTTTCGGCCTAGTTCCCAAGTCGCGCCTGTG
ATGATTGGTCCAAGTCCTGGCTTCCGCTTTCCTTTTGTAATGCAGTTGTGAGCTCGGGATCTGT
CCGCAGCCCAACATGACTGTACTTCTACTCTATAATAAAGAGACCTCTGTTGCTGTGATACTCT
GTCTCCCTGTGATACCAGCACTGTTTCCTAGGACTGGTATCGATTAACAGGTTAATTTGGAGCG
TCACGGGCTAGTTCCGGTCGGGACTAGTTCGGGGCGTGACACAAAGTTACAGGAAAGACTAGAC
TATACTATTCATCAAGGTTAAAGGAACAAACTGAACTTCAGGAAATGGACCTTCCCCATAGGAC
AGTAGACACTTCAGAACACTAGATGCACACTAGGGCAAGAAAGGCTGGGCTCATATGTTGTCAT
TGTTGAAGTTTGCACGTCTAGTTCTTCAGTTAATTTTCACAGACTCTGCTTCTAGGGTAAGAAG
TTTTTCTTCTTTGATAGTCTATTTCAGTTATAGTGATTTACCTGCTGGCCCAAGAAAGGATTTC
CACCAGGTCCACCAATCGCAACTTGCCCGATCTTCTTGCTGAATCCAAATCTTTCAACCATTTG
TCTTGCAACAC
Conservation Information
Conserved circRNAs NA
PMCS 0.097978293
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017