Detail information of Os04g0596400_circ_g.2


General Information
CircRNA Name Os04g0596400_circ_g.2
ID in PlantcircBase osa_circ_025041
Alias Os04circ12552
Organism Oryza sativa
Position chr4: 30082588-30083167  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer, SMALT, Segemehl
Parent gene Os04g0596400
Parent gene annotation Similar to UPF0195 protein CG30152. (Os04t0596400-01)
Parent gene strand -
Alternative splicing Os04g0596400_circ_g.1 Os04g0596400_circ_g.3
Support reads 2/1
Tissues leaf/root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0596400-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGCCTCTCTTTTTTCTCATAAACTACAGGGTTAGCATTTATTAACCCCACAACCATTTTTCTGA
TGCAATGCACTAATTTATATCAGAATGGCGAAATTCcttgtatcgagggggaagactccgcata
agtttcacacgcaggcaaagtccaatgacggtcgccatactgcaacgctccactgttggggtaa
aagtaacc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 374
Transcript exons: 30082588-30082687,30082773-30082876,30082998-30083167
CTTGTATCGAGGGGGAAGACTCCGCATAAGTTTCACACGCAGGCAAAGTCCAATGACGGTCGCC
ATACTGCAACGCTCCACTGTTGGGGTAAAAGTAACCCTGACATGACTAAGTTCATCATTGATTT
CAACTGAATCCTCAGTTACAACATTAAGCTCTTCGAGTGAGTATGGGTGCTCTGGATCCTTTAT
GTCTCTAATATGATCAAATATTTCTAGCTGGTCAATAGCCTCTGCCGCATTTTCATCTGTGGTT
TCTGGTGCCTGCCGAGAACGCCTCTCTTTTTTCTCATAAACTACAGGGTTAGCATTTATTAACC
CCACAACCATTTTTCTGATGCAATGCACTAATTTATATCAGAATGGCGAAATTC

Genomic sequence CTTGTATCGAGGGGGAAGACTCCGCATAAGTTTCACACGCAGGCAAAGTCCAATGACGGTCGCC
ATACTGCAACGCTCCACTGTTGGGGTAAAAGTAACCCTGAAGAGAATAACAGTGAATTGTTGTG
ACTGAATTTCATTAACAACCCATTGTAGCATACAATGATAGAGAGACGTAAACTTACCTGACAT
GACTAAGTTCATCATTGATTTCAACTGAATCCTCAGTTACAACATTAAGCTCTTCGAGTGAGTA
TGGGTGCTCTGGATCCTTTATGTCTCTAATATGATGTAAGAAGGTTAAGGAGTGCAAACAAAAG
AAAAATTGAGGGCAGCAGAACTCCAGATAGAGGTAAGTATAACAGGAAAGAGAGGTACACAGCA
TGTAGATAAGGAAACAAAGAAAGGATATCAAATATTTCTAGCTGGTCAATAGCCTCTGCCGCAT
TTTCATCTGTGGTTTCTGGTGCCTGCCGAGAACGCCTCTCTTTTTTCTCATAAACTACAGGGTT
AGCATTTATTAACCCCACAACCATTTTTCTGATGCAATGCACTAATTTATATCAGAATGGCGAA
ATTC
Conservation Information
Conserved circRNAs osi_circ_014726
PMCS 0.398308649
Functional Information
Coding potential Y
Potential coding position 30083132-30082613(+)
30083157-30082804(+)
30083125-30083143(-)
Potential amino acid sequence MQCTNLYQNGEIPCIEGEDSA*(+)
MAKFLVSRGKTPHKFHTQAKSNDGRHTATLHCWGKSNPDMTKFIIDFN*(+)
MVVGLINANPVVYEKKERRSRQAPETTDENAAEAIDQLEIFDHIRDIKDPEHPYSLEELNVVTE
DSVEINDELSHVRVTFTPTVERCSMATVIGLCLRVKLMRSLPPRYKEFRHSDIN*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015;Chu et al., 2017