Detail information of BGIOSGA014435_circ_igg.1


General Information
CircRNA Name BGIOSGA014435_circ_igg.1
ID in PlantcircBase osi_circ_014726
Alias Chr04:30825695_30826275(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 28935552-28936132  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGCCTCTCTTTTTTCTCATAAACTACAGGGTTAGCATTTATTAACCCCACAACCATTTTTCTGA
TGCAATGCACTAATTTATATCAGAATGGCGAAATTCccttgtatcgagggggaagactccgcat
aagtttcacacgcaggcaaagtccaatgacggtcgccatactgcaatgctccactgttggggta
aaagtaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTGTATCGAGGGGGAAGACTCCGCATAAGTTTCACACGCAGGCAAAGTCCAATGACGGTCGC
CATACTGCAATGCTCCACTGTTGGGGTAAAAGTAACCCTGAAGAGAATAACAGTGAATTGTTGT
GACTGAATTTCATTAACAGCCCATTGTAGCATCCAATGATAGAGAGACGTAAACTTACCTGACA
TGACTAAGTTCATCATTGATTTCAACTGAATCCTCAGTTACAACATTAAGCTCTTCGAGTGAGT
ATGGGTGCTCTGGATCCTTTATGTCTCTAATATGATGTAAGAAGGTTAAGGAGTGCAAACAAAA
GAAAAATTGAGGGCAGCAGAACTCCAGATAGAGGTAAGTATAACAGGAAAGAGAGGTACACAGC
ATGTAGATAAGGAAACAAAGAAAGGATATCAAATATTTCTAGCTGGTCAATAGCCTCTGCCGCA
TTTTCATCTGTGGTTTCTGGTGCCTGCCGAGAACGCCTCTCTTTTTTCTCATAAACTACAGGGT
TAGCATTTATTAACCCCACAACCATTTTTCTGATGCAATGCACTAATTTATATCAGAATGGCGA
AATTC
Conservation Information
Conserved circRNAs osa_circ_025041
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021