Detail information of AT3G04870_circ_g.3


General Information
CircRNA Name AT3G04870_circ_g.3
ID in PlantcircBase ath_circ_019739
Alias Ath_circ_FC1812, Ath_circ_FC1813
Organism Arabidpsis thaliana
Position chr3: 1343722-1345913  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT3G04870
Parent gene annotation Zeta-carotene desaturase, chloroplastic/chromoplastic
Parent gene strand +
Alternative splicing AT3G04870_circ_g.2 AT3G04870_circ_g.4 AT3G04870_circ_g.5
Support reads 2
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT3G04870.3:10
AT3G04870.1:10
AT3G04870.2:10
AT3G04870.4:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCAGTCTCTGTACCGTGAAGCACCCGGAAAAGATCCATTCAGACCCGATCAGAAGACGCCCATA
AAGAATTTCTTCCTCGCCGGTTCATACACAAAGCAGgtggatatatatgattcgaggacattca
ttggtggcaaagtgggttcttttgtagatagacgtgggaaccatattgaaatgggattacatgt
tttcttcg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGGATATATATGATTCGAGGACATTCATTGGTGGCAAAGTGGGTTCTTTTGTAGATAGACGTG
GGAACCATATTGAAATGGGATTACATGTTTTCTTCGGATGCTACAACAATCTCTTCCGTTTGAT
GAAAAAGGTTTTTGTTTCTCAAAGCTTCTGCTCAAATTTACTTGATGATTGAAACTCATACTCA
TGTATGGTTTTTTTTGTGGTGATGTAGGTGGGTGCTGAGAAAAACCTTCTAGTCAAAGACCATA
CTCATACATTTATAAACAAAGACGGCACAATTGGAGGTATGGCTCAGTTCATTATTCTCTTGCT
ATTGTGATTTTATCGTACTGAGATGTGCATATTATTTGTAGAGCTTGATTTTCGGTTTCCTGTT
GGAGCTCCAATCCATGGTATTCGCGCATTTTTGGTCACAAATCAACTCAAGGTATAAATCAAAC
TTTTAAATTGATTTATCTTTTAAATCTTTGGATTCATATCAATGCACTTTTCCGCCGTGGAAAA
TCGGCAACAGTTTTCTCAAATGTTCATAGCAAAAGATTAGTAATTTCTTGCTTTATGTACCAAT
ATCGAGCTTGCTAACTGCTTATTCTTGTTTTGACCGAACAGCCCTATGACAAACTAAGGAATTC
ACTGGCTCTTGCATTAAGCCCTGTTGTTAAAGCTCTTGTCGACCCCGATGGAGCAATGAGAGAC
ATTCGCAACCTTGACAGCGTAAAGAATGATAACCTGTTCTTCTTCTCATCTGTACTACTATTTG
TGTTCTCTAAATTTTCTGAAATACTTTTTGCAGATAAGTTTCTCGGATTGGTTCCTGTCAAAAG
GTGGGACACGGGCAAGTATCCAGAGAATGTGGGATCCTGTTGCTTATGCTCTAGGTTTCATAGA
CTGCGATAACATGAGTGCGCGATGCATGCTTACAATATTCTCATTATTCGCTACCAAAACAGAA
GCTTCTCTGTTGCGTATGCTCAAGGGCTCTCCTGATGTTTACTTGAGTGGTCCTATCAAACAAT
ATATCACAGATAGAGGTGGCAGGTGTGTATCTGCTATAACTACAAGAACTGATTCTCGCATTTA
TTATGTCATTGGCTTATCGGGTATTTATAATATTGTCTTCAAACAGAATCCATCTAAGGTGGGG
TTGCAGGGAGATACTTTATGATAAATCAGCAGATGGAGAAACTTATGTCACTGGACTAGCAATT
TCTAAGGTGAAATTTAGCTTCAGACGTAGGATTTTAGTGGACTGCGAAAATGTATACATACATT
CTGAAGGTTGCAGCTTCTGGGTAGAGAAAAAGCACAAAACTTTGATATGAAAGTAAAGGACTTT
TTTTGTTTTTTGGTTTGCTTTCAGGCTACGAACAAGAAGATTGTGAAAGCTGATGTATATGTTG
CAGCATGTGATGTGCCGGGAATCAAAAGGTTACTTCCAAAAGAATGGAGGGAATCTCGGTTTTT
CAACGATATATATGAACTCGAGGGAGTACCTGTGGTTACAGTACAGCTCAGATACAATGGTTGG
GTCACGGAGTTACAAGACATTGAACTTGCTAGGTTGGTAATCTAGAATCCTATGTTTTGGGATG
ATCGTGATGGATCTATTCTGTTTTGGTTTTAAGTCTTTGTTTTTGTGTTTTGGAAAATCGTAGG
CAGTTGAAACGAGCGGTTGGCTTAGATAATCTTCTCTACACTCCTGATGCTGATTTCTCGTGCT
TTGCGGATCTTGCACTAGCTTCGCCTGCAGATTATTACATCGAAGGACAAGGCACTTTACTTCA
GTAAGAAAGAATAACGTTTTTCTTTGTTTACAAAATCGCATGCAGGTCTCTCAGTGTCTTGAAA
CTGAATTCTGTTTTCACAGGTGCGTTCTAACACCAGGAGATCCGTATATGCGAATGCCAAATGA
TAAGATCATAGAGAAAGTAGCGATGCAGGTAAAGAACATGGCTAAATTCAACTCTTGAGAAAAC
TTTTGTCTAGCTGGTTTGTTGTTGATTCTCAAATCTTGTTCAGGTCACTGAGTTGTTTCCATCG
TCACGAGGCCTAGAAGTCACTTGGTCGTCGGTTGTAAAAATCGCTCAGTCTCTGTACCGTGAAG
CACCCGGAAAAGATCCATTCAGACCCGATCAGAAGACGCCCATAAAGAATTTCTTCCTCGCCGG
TTCATACACAAAGCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.165912156
Functional Information
Coding potential Y
Potential coding position 1343800-1345910(+)
Potential amino acid sequence MGLHVFFGCYNNLFRLMKKVGAEKNLLVKDHTHTFINKDGTIGELDFRFPVGAPIHGIRAFLVT
NQLKPYDKLRNSLALALSPVVKALVDPDGAMRDIRNLDSISFSDWFLSKGGTRASIQRMWDPVA
YALGFIDCDNMSARCMLTIFSLFATKTEASLLRMLKGSPDVYLSGPIKQYITDRGGRIHLRWGC
REILYDKSADGETYVTGLAISKATNKKIVKADVYVAACDVPGIKRLLPKEWRESRFFNDIYELE
GVPVVTVQLRYNGWVTELQDIELARQLKRAVGLDNLLYTPDADFSCFADLALASPADYYIEGQG
TLLQCVLTPGDPYMRMPNDKIIEKVAMQVTELFPSSRGLEVTWSSVVKIAQSLYREAPGKDPFR
PDQKTPIKNFFLAGSYTKQVDIYDSRTFIGGKVGSFVDRRGNHIEMGLHVFFGCYNNLFRLMKK
VGAEKNLLVKDHTHTFINKDGTIGELDFRFPVGAPIHGIRAFLVTNQLKPYDKLRNSLALALSP
VVKALVDPDGAMRDIRNLDSISFSDWFLSKGGTRASIQRMWDPVAYALGFIDCDNMSARCMLTI
FSLFATKTEASLLRMLKGSPDVYLSGPIKQYITDRGGRIHLRWGCREILYDKSADGETYVTGLA
ISKATNKKIVKADVYVAACDVPGIKRLLPKEWRESRFFNDIYELEGVPVVTVQLRYNGWVTELQ
DIELARQLKRAVGLDNLLYTPDADFSCFADLALASPADYYIEGQGTLLQCVLTPGDPYMRMPND
KIIEKVAMQVTELFPSSRGLEVTWSSVVKIAQSLYREAPGKDPFRPDQKTPIKNFFLAGSYTKQ
VDIYDSRTFIGGKVGSFVDRRGNHIEMGLHVFFGCYNNLFRLMKKVGAEKNLLVKDHTHTFINK
DGTIGELDFRFPVGAPIHGIRAFLVTNQLKPYDKLRNSLALALSPVVKALVDPDGAMRDIRNLD
SISFSDWFLSKGGTRASIQRMWDPVAYALGFIDCDNMSARCMLTIFSLFATKTEASLLRMLKGS
PDVYLSGPIKQYITDRGGRIHLRWGCREILYDKSADGETYVTGLAISKATNKKIVKADVYVAAC
DVPGIKRLLPKEWRESRFFNDIYELEGVPVVTVQLRYNGWVTELQDIELARQLKRAVGLDNLLY
TPDADFSCFADLALASPADYYIEGQGTLLQCVLTPGDPYMRMPNDKIIEKVAMQVTELFPSSRG
LEVTWSSVVKIAQSLYREAPGKDPFRPDQKTPIKNFFLAGSYTKQVDIYDSRTFIGGKVGSFVD
RRGNHIEMGLHVFFGCYNNLFRLMKKVGAEKNLLVKDHTHTFINKDGTIGELDFRFPVGAPIHG
IRAFLVTNQLKPYDKLRNSLALALSPVVKALVDPDGAMRDIRNLDSISFSDWFLSKGGTRASIQ
RMWDPVAYALGFIDCDNMSARCMLTIFSLFATKTEASLLRMLKGSPDVYLSGPIKQYITDRGGR
IHLRWGCREILYDKSADGETYVTGLAISKATNKKIVKADVYVAACDVPGIKRLLPKEWRESRFF
NDIYELEGVPVVTVQLRYNGWVTELQDIELARQLKRAVGLDNLLYTPDADFSCFADLALASPAD
YYIEGQGTLLQCVLTPGDPYMRMPNDKIIEKVAMQVTELFPSSRGLEVTWSSVVKIAQSLYREA
PGKDPFRPDQKTPIKNFFLAGSYTKQ(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a