Detail information of BGIOSGA035059_circ_g.2


General Information
CircRNA Name BGIOSGA035059_circ_g.2
ID in PlantcircBase osi_circ_003093
Alias 11:6543323|6544720
Organism Oryza sativa ssp. indica
Position chr11: 6543323-6544720  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA035059
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA035059_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA035059-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGGGACAGTAGTATGTGTGCTGATACTAGTCGAGGTGCTGCGATCCGAGATTTAGTTGGAAAA
GCTTGTAAAGGACCACTTTCACCTGCCCAACAGGAGgctgcttgtgatgaaacctctgataaac
cagaacagttgtttctccaacttctgttaaattcaactaatggggacaacgatagggaggtatt
ttatcgct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTGCTTGTGATGAAACCTCTGATAAACCAGAACAGTTGTTTCTCCAACTTCTGTTAAATTCAA
CTAATGGGGACAACGATAGGGAGGTATTTTATCGCTCTATGATTTCTTGTTTAACTATATGATT
TATATAGGCAAAATTGGTTATATGATTTTGCCATTTATATATAAATTTCACATGCATGGAGGTT
ACTGAGTCCTGAGGTATGGAGTACCCAGTTTTTTTTCTGGTCTTATGCCTTCATGGAGCATGTT
ACGAGGTGGAATCAACAATTTGTAAAACAGGAATTGGTTGATGCATGATAAATGATAAATTGCT
GTATATTAGCAAGTTTGAGTACCATGATCAGTTCTCCAGGGATCTAAAACATTACGGTTCTTTG
CAACCATTTCATCACAAATAGTAATTCTCACCATGTGATGCTAGGATTGAAACCCTATTAAAAC
AAAACTGTCCCTCCTATGATCATAATACTATCTTGTTTAGAAGTCTCATGGTATTCTTTTTAAG
GTCATAGTTTTTCCTGTCACTTGTATTGATCAACAGACATTAACTCCACCTTTACTATGTATGT
GAGCACATGCTCTGTTTGTATATTTGTTATGGAGATCATTTGGCATCGATATGATGATTATTTT
GTGTTCAGATTCTGAAGCATTCTGCTGCAGATTACTTGGAGGAATCTGCTTATGCATCTCAGGT
TAGATGATTGTTCTGTCATATAATTATGAAATTGACTGGACACTTTCCATAGGATGTAGGATCT
TATTTGTTTCGAGTGGTGTCTATTATGTAGGTCTTGCTCACCAGAGAGCAGCTTGAAAGACAAT
ATACCTGCAATGAAGTGCAACCCCAGCCTAGCACTGGTAGTTTCAGAGAAGCTACTGTTAGAAG
TGTTATTCCTGATCCAGATATTTCTCAAAGCTGCACTGATTCATCAGAGTACGTATACTCCAAC
TTTGTTCTTGGAATGTGATGATGGATATCCATAGGGGTGGTTCATTTTTCTCTCTTGGTCATTG
TTAATTAAGTTTGCTCATTATTTCTATAGGATATCAATAACCAAATCAAATAGAGATAATTTGG
TCACTGGTTTACTTCAACAAACATCACTTGATGGAATTGGTCCTCAGTGGATACGGCCTCCTCC
TCCAAGACTTGAAATACTTGATGGAGAGGTAAGGTTGTTGGCTAAAAGTTTTTGTTTAGTAGTA
CCTTTATTTCTGAATCTAAGGTGTACTTCTTGATGAATGTGCAGTTGCAGTGGCTGAACCTAGA
CAACAACCACGAGCTATTGTGGGACAGTAGTATGTGTGCTGATACTAGTCGAGGTGCTGCGATC
CGAGATTTAGTTGGAAAAGCTTGTAAAGGACCACTTTCACCTGCCCAACAGGAG
Conservation Information
Conserved circRNAs osa_circ_008922*
PMCS
Functional Information
Coding potential Y
Potential coding position 6544635-6544717(+)
Potential amino acid sequence MCADTSRGAAIRDLVGKACKGPLSPAQQEAACDETSDKPEQLFLQLLLNSTNGDNDREILKHSA
ADYLEESAYASQVLLTREQLERQYTCNEVQPQPSTGSFREATVRSVIPDPDISQSCTDSSEISI
TKSNRDNLVTGLLQQTSLDGIGPQWIRPPPPRLEILDGELQWLNLDNNHELLWDSSMCADTSRG
AAIRDLVGKACKGPLSPAQQEAACDETSDKPEQLFLQLLLNSTNGDNDREILKHSAADYLEESA
YASQVLLTREQLERQYTCNEVQPQPSTGSFREATVRSVIPDPDISQSCTDSSEISITKSNRDNL
VTGLLQQTSLDGIGPQWIRPPPPRLEILDGELQWLNLDNNHELLWDSSMCADTSRGAAIRDLVG
KACKGPLSPAQQEAACDETSDKPEQLFLQLLLNSTNGDNDREILKHSAADYLEESAYASQVLLT
REQLERQYTCNEVQPQPSTGSFREATVRSVIPDPDISQSCTDSSEISITKSNRDNLVTGLLQQT
SLDGIGPQWIRPPPPRLEILDGELQWLNLDNNHELLWDSSMCADTSRGAAIRDLVGKACKGPLS
PAQQE(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021