Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os11g0240900_circ_g.2 |
ID in PlantcircBase | osa_circ_008922 |
Alias | Os11circ03351/Os_ciR1854 |
Organism | Oryza sativa |
Position | chr11: 7516553-7517955 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, SMALT, Segemehl, find_circ |
Parent gene | Os11g0240900 |
Parent gene annotation |
Protein of unknown function DUF2363 domain containing protein. ( Os11t0240900-01) |
Parent gene strand | + |
Alternative splicing | Os11g0240900_circ_g.1 Os11g0240900_circ_g.3 Os11g0240900_circ_g.4 |
Support reads | 2/6/2 |
Tissues | leaf/root/root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os11t0240900-01:5 |
Conservation Information | |
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Conserved circRNAs | osi_circ_003093* osi_circ_009436 |
PMCS | 0.204996603 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
7517870-7517952(+) |
Potential amino acid sequence |
MCADTSRGAAIRDLVGKACKGPLSPAQQEAACDETSDKPEQLFLQLLLNSTNGDNDREILKHSA ADYLEESAYASQVLLTREQLERQYTCNEVQPQPSTGSFREATVRSVIPDPDISQSCTDSSEISI TKSNRDNLVTCLLQQTSLDGIGPQWIRPPPPRLEILDGELQWLNLDNNHELLWDSSMCADTSRG AAIRDLVGKACKGPLSPAQQEAACDETSDKPEQLFLQLLLNSTNGDNDREILKHSAADYLEESA YASQVLLTREQLERQYTCNEVQPQPSTGSFREATVRSVIPDPDISQSCTDSSEISITKSNRDNL VTCLLQQTSLDGIGPQWIRPPPPRLEILDGELQWLNLDNNHELLWDSSMCADTSRGAAIRDLVG KACKGPLSPAQQEAACDETSDKPEQLFLQLLLNSTNGDNDREILKHSAADYLEESAYASQVLLT REQLERQYTCNEVQPQPSTGSFREATVRSVIPDPDISQSCTDSSEISITKSNRDNLVTCLLQQT SLDGIGPQWIRPPPPRLEILDGELQWLNLDNNHELLWDSSMCADTSRGAAIRDLVGKACKGPLS PAQQE(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Lu et al., 2015;Ye et al., 2015;Chu et al., 2017 |