Detail information of Os11g0240900_circ_g.2


General Information
CircRNA Name Os11g0240900_circ_g.2
ID in PlantcircBase osa_circ_008922
Alias Os11circ03351/Os_ciR1854
Organism Oryza sativa
Position chr11: 7516553-7517955  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, SMALT, Segemehl, find_circ
Parent gene Os11g0240900
Parent gene annotation Protein of unknown function DUF2363 domain containing protein. (
Os11t0240900-01)
Parent gene strand +
Alternative splicing Os11g0240900_circ_g.1 Os11g0240900_circ_g.3 Os11g0240900_circ_g.4
Support reads 2/6/2
Tissues leaf/root/root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os11t0240900-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGGGACAGTAGTATGTGTGCTGATACTAGTCGAGGTGCTGCGATCCGAGATTTAGTTGGAAAA
GCTTGTAAAGGACCACTTTCACCTGCCCAACAGGAGgctgcttgtgatgaaacctctgataaac
cagaacagttgtttctccaacttctgttaaattcaactaatggggacaacgatagggaggtatt
ttatcgct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 552
Transcript exons: 7516553-7516639,7517206-7517259,7517356-7517501,7517611-
7517737,7517818-7517955
GCTGCTTGTGATGAAACCTCTGATAAACCAGAACAGTTGTTTCTCCAACTTCTGTTAAATTCAA
CTAATGGGGACAACGATAGGGAGATTCTGAAGCATTCTGCTGCAGATTACTTGGAGGAATCTGC
TTATGCATCTCAGGTCTTGCTCACCAGAGAGCAGCTTGAAAGACAATATACCTGCAATGAGGTG
CAACCCCAGCCTAGCACTGGTAGTTTCAGAGAAGCTACTGTTAGAAGTGTTATTCCTGATCCAG
ATATTTCTCAAAGCTGCACTGATTCATCAGAGATATCAATAACCAAATCAAATAGAGATAATTT
GGTCACTTGTTTACTTCAACAAACATCACTTGATGGAATTGGTCCTCAGTGGATACGGCCTCCT
CCTCCAAGACTTGAAATACTTGATGGAGAGTTGCAGTGGCTGAACCTAGACAACAACCACGAGC
TATTGTGGGACAGTAGTATGTGTGCTGATACTAGTCGAGGTGCTGCGATCCGAGATTTAGTTGG
AAAAGCTTGTAAAGGACCACTTTCACCTGCCCAACAGGAG

Genomic sequence GCTGCTTGTGATGAAACCTCTGATAAACCAGAACAGTTGTTTCTCCAACTTCTGTTAAATTCAA
CTAATGGGGACAACGATAGGGAGGTATTTTATCGCTCTATGATTTCTTGTTTAACTATATGATT
TATATAGGCAAAATTGGTTATATGATTTTGCCATTTATATATAAATTTCACATGCATGGAGGTT
ACTGAGCCCTGAGGTATGGAGTACCCAGTTTTTTTTCTGGTCTTATGCCTTCATGGAGCATGTT
ACGAGGTGGAATCAACAATTTGTAAAACAGGAATTGGTTGATGCATGATAAATGATAAATTGCT
GTATATTAGCAAGTTTGAGTACCATGATCAGTTCTCCAGGGATCTAATACATTACGGTTCTTTG
CAACCATTTCATCACAAATAGTAATTCTCACCATGTGATGCTAGGATTGAAACCCTATTAAAAC
AAAACTGTCCCTCCTATGATCATAATACTATCTTGTTTAGAAGTCTCATGGTATTCTTTTTAAG
GTCATAGTTTTTCCTGTCACTTTACTTGTATTGATCAACAGACATTAACTCCACCTTTACTATG
TATGTGAGCACATGCTCTGTTTGTATATTTGTTATGGAGATCATTTGGCATCGATATGATGATT
ATTTTGTGTTCAGATTCTGAAGCATTCTGCTGCAGATTACTTGGAGGAATCTGCTTATGCATCT
CAGGTTAGATGATTGTTCTGTCATATAATTATGAAATTGACTGGACACTTTCTCTAGGATGTAG
GATCTTATTTGTTTCGAGTGGTGTCTATTATGTAGGTCTTGCTCACCAGAGAGCAGCTTGAAAG
ACAATATACCTGCAATGAGGTGCAACCCCAGCCTAGCACTGGTAGTTTCAGAGAAGCTACTGTT
AGAAGTGTTATTCCTGATCCAGATATTTCTCAAAGCTGCACTGATTCATCAGAGTACGTATACT
CCAACTTTGTTCTTGGAATGTGATGATGGATATCCATAGGGGTGGTTCATTTTTCTCTCTTGGT
CATTGTTAATTAAGTTTGCTCATTATTTCTATAGGATATCAATAACCAAATCAAATAGAGATAA
TTTGGTCACTTGTTTACTTCAACAAACATCACTTGATGGAATTGGTCCTCAGTGGATACGGCCT
CCTCCTCCAAGACTTGAAATACTTGATGGAGAGGTAAGGTTGTTGGCTAAAAGTTTTTGTTTAG
TAGTACCTTTATTTCTGAATCTAAGGTGTACTTCTTGATGAATGGGCAGTTGCAGTGGCTGAAC
CTAGACAACAACCACGAGCTATTGTGGGACAGTAGTATGTGTGCTGATACTAGTCGAGGTGCTG
CGATCCGAGATTTAGTTGGAAAAGCTTGTAAAGGACCACTTTCACCTGCCCAACAGGAG
Conservation Information
Conserved circRNAs osi_circ_003093* osi_circ_009436
PMCS 0.204996603
Functional Information
Coding potential Y
Potential coding position 7517870-7517952(+)
Potential amino acid sequence MCADTSRGAAIRDLVGKACKGPLSPAQQEAACDETSDKPEQLFLQLLLNSTNGDNDREILKHSA
ADYLEESAYASQVLLTREQLERQYTCNEVQPQPSTGSFREATVRSVIPDPDISQSCTDSSEISI
TKSNRDNLVTCLLQQTSLDGIGPQWIRPPPPRLEILDGELQWLNLDNNHELLWDSSMCADTSRG
AAIRDLVGKACKGPLSPAQQEAACDETSDKPEQLFLQLLLNSTNGDNDREILKHSAADYLEESA
YASQVLLTREQLERQYTCNEVQPQPSTGSFREATVRSVIPDPDISQSCTDSSEISITKSNRDNL
VTCLLQQTSLDGIGPQWIRPPPPRLEILDGELQWLNLDNNHELLWDSSMCADTSRGAAIRDLVG
KACKGPLSPAQQEAACDETSDKPEQLFLQLLLNSTNGDNDREILKHSAADYLEESAYASQVLLT
REQLERQYTCNEVQPQPSTGSFREATVRSVIPDPDISQSCTDSSEISITKSNRDNLVTCLLQQT
SLDGIGPQWIRPPPPRLEILDGELQWLNLDNNHELLWDSSMCADTSRGAAIRDLVGKACKGPLS
PAQQE(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA