Detail information of GLYMA_19G250600_circ_g.4


General Information
CircRNA Name GLYMA_19G250600_circ_g.4
ID in PlantcircBase gma_circ_005083
Alias Gm19circRNA495
Organism Glycine max
Position chr19: 49658583-49661308  JBrowse»
Reference genome v2.0.38
Type   e-circRNA
Identification method Tophat, CIRI
Parent gene GLYMA_19G250600
Parent gene annotation hypothetical protein
Parent gene strand +
Alternative splicing GLYMA_19G250600_circ_g.2 GLYMA_19G250600_circ_g.3 GLYMA_19G250600_circ_g.5 GLYMA_19G250600_circ_g.6 GLYMA_19G250600_circ_g.7
Support reads NA
Tissues leaf, root, stem
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered KRG97079:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTGTCTAGAGATCTTTCTGTAGACTCTTTTAGTCTCATGTTGAATGAGATGCAAGAGAACATT
TCCCTTGTATCATTTTCTAGTCGATTGGCCTCACAGtttccaattgaatgctcccttccttgga
tgttggtggattgtgtacttgagtcaccgaattctggtcttctcgagagtgttctaatgccatt
tgacatct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 615
Transcript exons: 49658583-49658753,49659317-49659393,49659489-49659591,49
660942-49661061,49661165-49661308
TTTCCAATTGAATGCTCCCTTCCTTGGATGTTGGTGGATTGTGTACTTGAGTCACCGAATTCTG
GTCTTCTCGAGAGTGTTCTAATGCCATTTGACATCTATAATGATTCAGCTCAGCAAGCCTTGGT
GTTGCTGAAGCAACGGTTTTTATACGATGAAATTGAGGCTGAGGTGGATCATTGTTTTGATATA
TTTGTTACAAAATTATGTGAAACCATTTTCACATATTACAAAAGTTGGGCGGCATGTGAATTGC
TTGATCCTTCATTCCTCTTTGCTTCGGACAATGCAGAAAAGTATGCCGTGCAACCCATAAGGCT
CAATATGCTGCTTAAAATGACTAGAGTGAAGCTGCTTGGAAGGATGATTAATTTGCGAAGTTTG
ATCACTGAACGGATGAACAAGGTTTTCCGTGAAAATATTGAGTTTTTATTTGATCGTTTTGAGT
GTCAGGATCTGTGTGCCATAGTGGAATTAGAGAAGTTGTTGGATGTCTTAAAACATTCCCATGA
ACTACTGTCTAGAGATCTTTCTGTAGACTCTTTTAGTCTCATGTTGAATGAGATGCAAGAGAAC
ATTTCCCTTGTATCATTTTCTAGTCGATTGGCCTCACAG

Genomic sequence TTTCCAATTGAATGCTCCCTTCCTTGGATGTTGGTGGATTGTGTACTTGAGTCACCGAATTCTG
GTCTTCTCGAGAGTGTTCTAATGCCATTTGACATCTATAATGATTCAGCTCAGCAAGCCTTGGT
GTTGCTGAAGCAACGGTTTTTATACGATGAAATTGAGGCTGAGGTATTATACATTTTTAACTTA
ATGGCTAATGCTAGATGATTATATGATGAATGTCCTGGAGCAGTATAATATCTGATACAGATGA
TTTTAGGTGGATATGCTGTAGTGCACCAAATTCATGGGTGTAACTTATGTGCTGATAGGCATCA
TCCTACAGTTACCGAATTTAAGAGATGATAAAAAGAATACTAGGGGAATTGAGCACAACGAGTA
GAAGTGGGAATTGGGCTATAAAATTCTTGCTTGCATGGCAAGGTGGGAAGGAAGGGGAAACTTG
GGAGGGTGAAAATAAGGGAGGGGTGGGAGGATCTTTGTGGTGGCATCCAGAAAATTGAGTGGGG
ACAGGGAGGAGGCAGGACCCTCAATGAGCCTGCATTTTTATGTGTTTTCTTTTCTATTTTGAGA
GTTGTTTGTAAATTCTTGCCTCTGTTGACATCAGTTTATACCGGTAGCAGAGAGTAAATTCTGG
TGCTAGTACAATAAGATTTTTGCTTCTGATTACCAGTTTCCTATCATATGCTTTCTGCATTCAT
TGACTCTTTTCTGTTTACCTTTTTTCACAGGTGGATCATTGTTTTGATATATTTGTTACAAAAT
TATGTGAAACCATTTTCACATATTACAAAAGTTGGGCGGCATGGTATGCTCATTATTTCTCTGG
CTTATTCAGCTTTTCTTTTGATTATTTCCATGGACAAACCTTTTTTCTTACTGATGGAGGCCTA
AATCATGCAGTGAATTGCTTGATCCTTCATTCCTCTTTGCTTCGGACAATGCAGAAAAGTATGC
CGTGCAACCCATAAGGCTCAATATGCTGCTTAAAATGACTAGAGTGAAGGTGAATGAATTACAC
TATCATAATTTTTATTTTCCATGATTAGATTTGGTGCATTAAAGTGTAAACTGGGTGTATGCTA
CCAGATTGATAATTTTTTGATATGAAAATAGCCCAAGGTGCAGGGATTGAAAATATATGTACAT
GCTATTAGATACCCATCTCCCAGCAGGGTTTGGAAATGCTTGACTGAAGCCTTAGTTTAAGTGA
ACAAAGCTTAACTGTTTCATTACTTCTTTATTTAGTATTTATCAGGGTGTTAACAATTCAAATC
TCATTATCTTTTCAAGTGATCTTGGAATCATGTGACTTACTATAACTTCAGGAATTATACAAAA
CAGATGTCTTTGTGTACTATTATAAGCAGGAATAAGTTTTTAGAATATTTTTCTTCCTAAGAAT
TTAATATTTTACTGGTTATCAGTTAGTTGCATTTGCATCAAAATCTTCCCACAAGTTAGCAAAG
CTTGTTGATCAGAAAGTCCAAGTTTGAAATCTTGTGAATGGAAAAACAGGTGCTGGGAGAGTGT
TGCCTGTCTAATTGGTTCAACCCAACTCAACTTGGATTAGTTAAGGTCCAAGGTGGCTTTTGGA
TGTTTGGTCTATCTTTTTGGAGCTTCTCCTCTCTTTGAAAGGAGAAACCAGGCCAAATACAATT
CTAAAAAAACTATTAAGTATAAAAGTGGCTTTTTTCTATATGAACTAAGGAAGAAAACATAAAA
AAAGAAGAGCTTTTAGATAATCTATATTTTAGGAACTTCTGCTTTCCCTTCTTCACTTTTCCAA
ATCCCAAAACTCAGTAGTGTGCTAACCAAGAATTATTAACTAAAAATTTACTTTTAAGCTGAAC
GAATATAAAATTATCAAACACATTCAATTATAAAGTTTTATTTTTACTTGAACTTTAAAGTAGT
TTTTAAGATCCAAAAAAATCAATCCAAAGGCCACCTAGTGAAAAAGTTCTCTAAAGTTATTGAC
GGAGAGAATAAAGACATCTTGGTAGGTGTTTTACTTTTCAATATTTTGTTTCTAGGGTAATTCC
ATTTTAATCATTAATAAAATTCTTGTAGAAACTTCTGGTGTCAAAAGGATGGAAAGTAGGTTCC
GATCATCTTCAATGCCACATCCTGCAACAAACTAATGGAGATTGTTTAAGAAAATAATAATGAA
GGCTAAGATTGATGCTTACATGAATTATAACTTTTATTTTCATGGTGTATTCGTTTTTCTATTT
AGATGATTTCTCTCACACTCACACTCCCACACTCACATGTATGTTCTGCTGGATGTCATAATTA
GAATTTGAGTGAGTTGCAATTACTCTCATGTGATTAAATATCTTTTGTTGCACAGCTGCTTGGA
AGGATGATTAATTTGCGAAGTTTGATCACTGAACGGATGAACAAGGTTTTCCGTGAAAATATTG
AGTTTTTATTTGATCGTTTTGAGTGTCAGGATCTGTGTGCCATAGTGGTTAGTGATTTTACCTT
TGCTACTTCCCTGCCCAACAATTATGAACTACTTTTTCTTTTCTCAATGTTCATTAACTAATGT
AATACTGACTATTTTATTTCAGGAATTAGAGAAGTTGTTGGATGTCTTAAAACATTCCCATGAA
CTACTGTCTAGAGATCTTTCTGTAGACTCTTTTAGTCTCATGTTGAATGAGATGCAAGAGAACA
TTTCCCTTGTATCATTTTCTAGTCGATTGGCCTCACAG
Conservation Information
Conserved circRNAs NA
PMCS 0.201875404
Functional Information
Coding potential Y
Potential coding position 49658611-49661305(+)
49661254-49658664(+)
49658682-49661042(-)
49658675-49661291(-)
Potential amino acid sequence MLVDCVLESPNSGLLESVLMPFDIYNDSAQQALVLLKQRFLYDEIEAEVDHCFDIFVTKLCETI
FTYYKSWAACELLDPSFLFASDNAEKYAVQPIRLNMLLKMTRVKLLGRMINLRSLITERMNKVF
RENIEFLFDRFECQDLCAIVELEKLLDVLKHSHELLSRDLSVDSFSLMLNEMQENISLVSFSSR
LASQFPIECSLPWMLVDCVLESPNSGLLESVLMPFDIYNDSAQQALVLLKQRFLYDEIEAEVDH
CFDIFVTKLCETIFTYYKSWAACELLDPSFLFASDNAEKYAVQPIRLNMLLKMTRVKLLGRMIN
LRSLITERMNKVFRENIEFLFDRFECQDLCAIVELEKLLDVLKHSHELLSRDLSVDSFSLMLNE
MQENISLVSFSSRLASQFPIECSLPWMLVDCVLESPNSGLLESVLMPFDIYNDSAQQALVLLKQ
RFLYDEIEAEVDHCFDIFVTKLCETIFTYYKSWAACELLDPSFLFASDNAEKYAVQPIRLNMLL
KMTRVKLLGRMINLRSLITERMNKVFRENIEFLFDRFECQDLCAIVELEKLLDVLKHSHELLSR
DLSVDSFSLMLNEMQENISLVSFSSRLASQFPIECSLPWMLVDCVLESPNSGLLESVLMPFDIY
NDSAQQALVLLKQRFLYDEIEAEVDHCFDIFVTKLCETIFTYYKSWAACELLDPSFLFASDNAE
KYAVQPIRLNMLLKMTRVKLLGRMINLRSLITERMNKVFRENIEFLFDRFECQDLCAIVELEKL
LDVLKHSHELLSRDLSVDSFSLMLNEMQENISLVSFSSRLASQ(+)
MRCKRTFPLYHFLVDWPHSFQLNAPFLGCWWIVYLSHRILVFSRVF*(+)
MSNGIRTLSRRPEFGDSSTQSTNIQGREHSIGNCEANRLENDTREMFSCISFNMRLKESTERSL
DSSSWECFKTSNNFSNSTMAHRS*(-)
MALEHSREDQNSVTQVHNPPTSKEGSIQLETVRPID*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhao et al., 2017a