Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | GLYMA_19G250600_circ_g.4 |
| ID in PlantcircBase | gma_circ_005083 |
| Alias | Gm19circRNA495 |
| Organism | Glycine max |
| Position | chr19: 49658583-49661308 JBrowse» |
| Reference genome | v2.0.38 |
| Type | e-circRNA |
| Identification method | Tophat, CIRI |
| Parent gene | GLYMA_19G250600 |
| Parent gene annotation |
hypothetical protein |
| Parent gene strand | + |
| Alternative splicing | GLYMA_19G250600_circ_g.2 GLYMA_19G250600_circ_g.3 GLYMA_19G250600_circ_g.5 GLYMA_19G250600_circ_g.6 GLYMA_19G250600_circ_g.7 |
| Support reads | NA |
| Tissues | leaf, root, stem |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | KRG97079:5 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.201875404 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
49658611-49661305(+) 49661254-49658664(+) 49658682-49661042(-) 49658675-49661291(-) |
| Potential amino acid sequence |
MLVDCVLESPNSGLLESVLMPFDIYNDSAQQALVLLKQRFLYDEIEAEVDHCFDIFVTKLCETI FTYYKSWAACELLDPSFLFASDNAEKYAVQPIRLNMLLKMTRVKLLGRMINLRSLITERMNKVF RENIEFLFDRFECQDLCAIVELEKLLDVLKHSHELLSRDLSVDSFSLMLNEMQENISLVSFSSR LASQFPIECSLPWMLVDCVLESPNSGLLESVLMPFDIYNDSAQQALVLLKQRFLYDEIEAEVDH CFDIFVTKLCETIFTYYKSWAACELLDPSFLFASDNAEKYAVQPIRLNMLLKMTRVKLLGRMIN LRSLITERMNKVFRENIEFLFDRFECQDLCAIVELEKLLDVLKHSHELLSRDLSVDSFSLMLNE MQENISLVSFSSRLASQFPIECSLPWMLVDCVLESPNSGLLESVLMPFDIYNDSAQQALVLLKQ RFLYDEIEAEVDHCFDIFVTKLCETIFTYYKSWAACELLDPSFLFASDNAEKYAVQPIRLNMLL KMTRVKLLGRMINLRSLITERMNKVFRENIEFLFDRFECQDLCAIVELEKLLDVLKHSHELLSR DLSVDSFSLMLNEMQENISLVSFSSRLASQFPIECSLPWMLVDCVLESPNSGLLESVLMPFDIY NDSAQQALVLLKQRFLYDEIEAEVDHCFDIFVTKLCETIFTYYKSWAACELLDPSFLFASDNAE KYAVQPIRLNMLLKMTRVKLLGRMINLRSLITERMNKVFRENIEFLFDRFECQDLCAIVELEKL LDVLKHSHELLSRDLSVDSFSLMLNEMQENISLVSFSSRLASQ(+) MRCKRTFPLYHFLVDWPHSFQLNAPFLGCWWIVYLSHRILVFSRVF*(+) MSNGIRTLSRRPEFGDSSTQSTNIQGREHSIGNCEANRLENDTREMFSCISFNMRLKESTERSL DSSSWECFKTSNNFSNSTMAHRS*(-) MALEHSREDQNSVTQVHNPPTSKEGSIQLETVRPID*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Zhao et al., 2017a |