Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d037333_circ_g.4 |
ID in PlantcircBase | zma_circ_009021 |
Alias | Zm06circ00046, GRMZM2G431708_C2 |
Organism | Zea mays |
Position | chr6: 121799983-121800476 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d037333 |
Parent gene annotation |
ketose-bisphosphate aldolase class-II family protein |
Parent gene strand | - |
Alternative splicing | Zm00001d037333_circ_g.3 Zm00001d037333_circ_g.5 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d037333_T001:3 Zm00001d037333_T023:3 Zm00001d037333_T030:3 Zm00001d037333_T004:3 Zm00001d037333_T012:3 Zm00001d037333_T020:3 Zm00001d037333_T005:3 Zm00001d037333_T031:3 Zm00001d037333_T008:3 Zm00001d037333_T006:3 Zm00001d037333_T017:3 Zm00001d037333_T013:3 Zm00001d037333_T002:2 Zm00001d037333_T027:3 Zm00001d037333_T019:2 Zm00001d037333_T018:3 Zm00001d037333_T034:3 Zm00001d037333_T011:3 Zm00001d037333_T022:3 Zm00001d037333_T016:3 Zm00001d037333_T014:3 Zm00001d037333_T007:3 Zm00001d037333_T021:3 Zm00001d037333_T015:3 Zm00001d037333_T029:3 Zm00001d037333_T032:3 Zm00001d037333_T033:3 Zm00001d037333_T009:3 Zm00001d037333_T024:3 Zm00001d037333_T003:3 Zm00001d037333_T026:3 Zm00001d037333_T028:3 Zm00001d037333_T025:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.220268995 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
121800439-121799985(-) |
Potential amino acid sequence |
MAVFASGMIQAELKGKRFLCRTAASFVSARIGIKPKPPICPNDLGLKRALTGGLIIVGSYVPKT TKQVDELRSQFGQSLRVIEGSVCIVNAASDRDMAVFASGMIQAELKGKRFLCRTAASFVSARIG IKPKPPICPNDLGLKRALTGGLIIVGSYVPKTTKQVDELRSQFGQSLRVIEGSVCIVNAASDRD MAVFASGMIQAELKGKRFLCRTAASFVSARIGIKPKPPICPNDLGLKRALTGGLIIVGSYVPKT TKQVDELRSQFGQSLRVIEGSVCIVNAASDRDMAVFASGMIQAELKGKRFLCRTAASFVSARIG IKPKPPICPNDLGLKRALTGGLIIVGSYVPKTTKQVDELRSQFGQSLRVIE(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Han et al., 2020;Zhang et al., 2019 |