Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d037333_circ_g.5 |
ID in PlantcircBase | zma_circ_009022 |
Alias | Zm06circ00047 |
Organism | Zea mays |
Position | chr6: 121800119-121800476 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d037333 |
Parent gene annotation |
ketose-bisphosphate aldolase class-II family protein |
Parent gene strand | - |
Alternative splicing | Zm00001d037333_circ_g.3 Zm00001d037333_circ_g.4 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d037333_T016:2 Zm00001d037333_T026:2 Zm00001d037333_T009:2 Zm00001d037333_T001:2 Zm00001d037333_T025:2 Zm00001d037333_T003:2 Zm00001d037333_T031:2 Zm00001d037333_T013:2 Zm00001d037333_T014:2 Zm00001d037333_T030:2 Zm00001d037333_T027:2 Zm00001d037333_T020:2 Zm00001d037333_T005:2 Zm00001d037333_T002:2 Zm00001d037333_T028:2 Zm00001d037333_T029:2 Zm00001d037333_T004:2 Zm00001d037333_T006:2 Zm00001d037333_T015:2 Zm00001d037333_T017:2 Zm00001d037333_T012:2 Zm00001d037333_T011:2 Zm00001d037333_T019:1 Zm00001d037333_T032:2 Zm00001d037333_T034:2 Zm00001d037333_T033:2 Zm00001d037333_T023:2 Zm00001d037333_T018:2 Zm00001d037333_T022:2 Zm00001d037333_T021:2 Zm00001d037333_T007:2 Zm00001d037333_T024:2 Zm00001d037333_T008:2 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.247575396 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
121800157-121800473(+) 121800439-121800121(-) 121800143-121800415(-) |
Potential amino acid sequence |
MRPPVKALFKPRSFGQIGGFGLIPILALTKLAAVRQRNRFPFNSAWIIPEAKTAMSLSLAALTM HTEPCFVVFGTYEPTIMRPPVKALFKPRSFGQIGGFGLIPILALTKLAAVRQRNRFPFNSAWII PEAKTAMSLSLAALTMHTEPCFVVFGTYEPTIMRPPVKALFKPRSFGQIGGFGLIPILALTKLA AVRQRNRFPFNSAWIIPEAKTAMSLSLAALTMHTEPCFVVFGTYEPTIMRPPVKALFKPRSFGQ IGGFGLIPILALTKLAAVRQRNRFPFNSAWIIPEAKTAMSLSLAALTMHTE(+) MAVFASGMIQAELKGKRFLCRTAASFVSARIGIKPKPPICPNDLGLKRALTGGLIIVGSYVPKT TKQGSVCIVNAASDRDMAVFASGMIQAELKGKRFLCRTAASFVSARIGIKPKPPICPNDLGLKR ALTGGLIIVGSYVPKTTKQGSVCIVNAASDRDMAVFASGMIQAELKGKRFLCRTAASFVSARIG IKPKPPICPNDLGLKRALTGGLIIVGSYVPKTTKQGSVCIVNAASDRDMAVFASGMIQAELKGK RFLCRTAASFVSARIGIKPKPPICPNDLGLKRALTGGLIIVGSYVPKTTKQ(-) MCQKLQSRALCASSMLLVTGTWLSLLLE*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Han et al., 2020 |