Plant Circular RNA Database

Detail information of Os07g0675000_circ_g.5

			
						 General Information
					
						CircRNA Name
						Os07g0675000_circ_g.5
					
						ID in PlantcircBase
						osa_circ_035291
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr7: 28555845-28557200  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os07g0675000						
					
						Parent gene annotation
						
							Similar to predicted protein. (Os07t0675000-01);Protein kinase-l
ike domain containing protein. (Os07t0675000-02);Similar to IBR3
 (IBA-RESPONSE 3); acyl-CoA dehydrogenase/ oxidoreductase. (Os07
t0675000-03)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os07g0675000_circ_g.3 Os07g0675000_circ_g.4 Os07g0675000_circ_g.6 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os07t0675000-02:5
Os07t0675000-01:4
Os07t0675000-03:2

General Information
CircRNA Name	Os07g0675000_circ_g.5
ID in PlantcircBase	osa_circ_035291
Alias	NA
Organism	Oryza sativa
Position	chr7: 28555845-28557200 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os07g0675000
Parent gene annotation	Similar to predicted protein. (Os07t0675000-01);Protein kinase-l ike domain containing protein. (Os07t0675000-02);Similar to IBR3 (IBA-RESPONSE 3); acyl-CoA dehydrogenase/ oxidoreductase. (Os07 t0675000-03)
Parent gene strand	+
Alternative splicing	Os07g0675000_circ_g.3 Os07g0675000_circ_g.4 Os07g0675000_circ_g.6
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os07t0675000-02:5 Os07t0675000-01:4 Os07t0675000-03:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							CACAAATCTTGAATATGGATATCTATGTGAGATTATGGGCCGTTCAATTTGGGCTCCACAAATA
TTTAACTGTGGTCCACCTGATACAGGCAACATGGAGccgtatattattgatgcaacaactagta
caggttattcttatggtggatttgaatatactggcattccagatggcattcccccactggaaga
gtacctcg

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							CCGTATATTATTGATGCAACAACTAGTACAGGTTATTCTTATGGTGGATTTGAATATACTGGCA
TTCCAGATGGCATTCCCCCACTGGAAGAGTACCTCGCTGCATACTGCTCTATCTCTGTAAGAAT
CACGTCTCCTACATCTTGGTCTACAAGTTATTCTTATGGTGGAGTTGAACAACATCTTGATACT
GGCTGAATATATACACCAAACTTATTGCTTCTTTATTCCTCATTAATCATTATATTCTTTAAAA
TTGTTTCTCAGGCAAGACCCTGGCCGGCTGCAAGTTGGAAGTTTTATGTTGCCTTTTCGCTTTT
TCGAGGGGCATCTATATATGCAGGAGTATATCACAGATGGACTATGGTACTTATCTGTAACCCT
TGAAATCTAATTCTGCTTATATATTCTAATTTATTTGAGCTGTCACACAGGGTAATGCTTCAGG
TGGTGAGCGTGCTAGATTTTCTGGCAAGATTGCTAATGCTATGGTTGACCGTGCCTGGGATATC
ATAAATAGAGAAAATGTCCTGAGAGAACAGCCTGCTAGGGGTAATTATATTTTATAATCTCTCC
ACAGTCCATACCATATGGTTGGCGAGTGCAAATGCTGCTTATTTTTTTCTTAAATTTCTATGGT
TATTTCGTAATAATAGTGTTGGCAAAGACATGAAAAATGTGGTTATATTTCTTTATTCTTTCCA
AGTCTAATAAAAAAAATTAACTTCTTTACTTTTAATATCAGGTATGCATGCCTCAAATGGCCCA
TCGCAAGAATTCCAAAGAAAGCATGAAGGATCAATTTCGACAAAAGATCAAGGAAAATTTGTTC
CTAGTGAAAAGGTTATGCAGCTTCGAAACAAATTGATGAAGTTTATGGAAGATTACATATACCC
GATGGAGAGTGAGTTCTATAAACGCGCACATTCGACCTCAAGGTGGACAATTCATCCAGAAGAA
GAAAAACTAAAAGCCTTAGCAAAGAGAGAGGGACTATGGAACTTGTTTATTCCGGTAACTTTCC
CTTTTTTTATATTAAAACCTTAAGGCCCTTCATTTTTTTCCTGATACATTGATTCATCACACAT
ATTTGTCGTGTTAGTACTGTAGACTGCATTTATTTTGGACTTTCTTCTTCTAATCAAAATGTTT
GATCTGCAGCTAGACAGTGCTGCTAGAGCAAGAGAGCTTCTGTTTGAGGACATGTCTCATGGTT
CTCCTGGAAGTTCTGAGGAGCTTTTGCTAGGTGCAGGTCTCACAAATCTTGAATATGGATATCT
ATGTGAGATTATGGGCCGTTCAATTTGGGCTCCACAAATATTTAACTGTGGTCCACCTGATACA
GGCAACATGGAG

Sequences
Splice junction sequence	CACAAATCTTGAATATGGATATCTATGTGAGATTATGGGCCGTTCAATTTGGGCTCCACAAATA TTTAACTGTGGTCCACCTGATACAGGCAACATGGAGccgtatattattgatgcaacaactagta caggttattcttatggtggatttgaatatactggcattccagatggcattcccccactggaaga gtacctcg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CCGTATATTATTGATGCAACAACTAGTACAGGTTATTCTTATGGTGGATTTGAATATACTGGCA TTCCAGATGGCATTCCCCCACTGGAAGAGTACCTCGCTGCATACTGCTCTATCTCTGTAAGAAT CACGTCTCCTACATCTTGGTCTACAAGTTATTCTTATGGTGGAGTTGAACAACATCTTGATACT GGCTGAATATATACACCAAACTTATTGCTTCTTTATTCCTCATTAATCATTATATTCTTTAAAA TTGTTTCTCAGGCAAGACCCTGGCCGGCTGCAAGTTGGAAGTTTTATGTTGCCTTTTCGCTTTT TCGAGGGGCATCTATATATGCAGGAGTATATCACAGATGGACTATGGTACTTATCTGTAACCCT TGAAATCTAATTCTGCTTATATATTCTAATTTATTTGAGCTGTCACACAGGGTAATGCTTCAGG TGGTGAGCGTGCTAGATTTTCTGGCAAGATTGCTAATGCTATGGTTGACCGTGCCTGGGATATC ATAAATAGAGAAAATGTCCTGAGAGAACAGCCTGCTAGGGGTAATTATATTTTATAATCTCTCC ACAGTCCATACCATATGGTTGGCGAGTGCAAATGCTGCTTATTTTTTTCTTAAATTTCTATGGT TATTTCGTAATAATAGTGTTGGCAAAGACATGAAAAATGTGGTTATATTTCTTTATTCTTTCCA AGTCTAATAAAAAAAATTAACTTCTTTACTTTTAATATCAGGTATGCATGCCTCAAATGGCCCA TCGCAAGAATTCCAAAGAAAGCATGAAGGATCAATTTCGACAAAAGATCAAGGAAAATTTGTTC CTAGTGAAAAGGTTATGCAGCTTCGAAACAAATTGATGAAGTTTATGGAAGATTACATATACCC GATGGAGAGTGAGTTCTATAAACGCGCACATTCGACCTCAAGGTGGACAATTCATCCAGAAGAA GAAAAACTAAAAGCCTTAGCAAAGAGAGAGGGACTATGGAACTTGTTTATTCCGGTAACTTTCC CTTTTTTTATATTAAAACCTTAAGGCCCTTCATTTTTTTCCTGATACATTGATTCATCACACAT ATTTGTCGTGTTAGTACTGTAGACTGCATTTATTTTGGACTTTCTTCTTCTAATCAAAATGTTT GATCTGCAGCTAGACAGTGCTGCTAGAGCAAGAGAGCTTCTGTTTGAGGACATGTCTCATGGTT CTCCTGGAAGTTCTGAGGAGCTTTTGCTAGGTGCAGGTCTCACAAATCTTGAATATGGATATCT ATGTGAGATTATGGGCCGTTCAATTTGGGCTCCACAAATATTTAACTGTGGTCCACCTGATACA GGCAACATGGAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.161688692

Conservation Information
Conserved circRNAs	NA
PMCS	0.161688692

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							28556209-28557197(+)
28557116-28556357(+)
						
						Potential amino acid sequence
						
							MGNASGGERARFSGKIANAMVDRAWDIINRENVLREQPARGMHASNGPSQEFQRKHEGSISTKD
QGKFVPSEKVMQLRNKLMKFMEDYIYPMESEFYKRAHSTSRWTIHPEEEKLKALAKREGLWNLF
IPLDSAARARELLFEDMSHGSPGSSEELLLGAGLTNLEYGYLCEIMGRSIWAPQIFNCGPPDTG
NMEPYIIDATTSTGYSYGGFEYTGIPDGIPPLEEYLAAYCSISARPWPAASWKFYVAFSLFRGA
SIYAGVYHRWTMGNASGGERARFSGKIANAMVDRAWDIINRENVLREQPARGMHASNGPSQEFQ
RKHEGSISTKDQGKFVPSEKVMQLRNKLMKFMEDYIYPMESEFYKRAHSTSRWTIHPEEEKLKA
LAKREGLWNLFIPLDSAARARELLFEDMSHGSPGSSEELLLGAGLTNLEYGYLCEIMGRSIWAP
QIFNCGPPDTGNMEPYIIDATTSTGYSYGGFEYTGIPDGIPPLEEYLAAYCSISARPWPAASWK
FYVAFSLFRGASIYAGVYHRWTMGNASGGERARFSGKIANAMVDRAWDIINRENVLREQPARGM
HASNGPSQEFQRKHEGSISTKDQGKFVPSEKVMQLRNKLMKFMEDYIYPMESEFYKRAHSTSRW
TIHPEEEKLKALAKREGLWNLFIPLDSAARARELLFEDMSHGSPGSSEELLLGAGLTNLEYGYL
CEIMGRSIWAPQIFNCGPPDTGNMEPYIIDATTSTGYSYGGFEYTGIPDGIPPLEEYLAAYCSI
SARPWPAASWKFYVAFSLFRGASIYAGVYHRWTMGNASGGERARFSGKIANAMVDRAWDIINRE
NVLREQPARGMHASNGPSQEFQRKHEGSISTKDQGKFVPSEKVMQLRNKLMKFMEDYIYPMESE
FYKRAHSTSRWTIHPEEEKLKALAKREGLWNLFIPLDSAARARELLFEDMSHGSPGSSEELLLG
AGLTNLEYGYLCEIMGRSIWAPQIFNCGPPDTGNME(+)
MDIYVRLWAVQFGLHKYLTVVHLIQATWSRILLMQQLVQVILMVDLNILAFQMAFPHWKSTSLH
TALSLQDPGRLQVGSFMLPFRFFEGHLYMQEYITDGLWVMLQVVSVLDFLARLLMLWLTVPGIS
*(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	28556209-28557197(+) 28557116-28556357(+)
Potential amino acid sequence	MGNASGGERARFSGKIANAMVDRAWDIINRENVLREQPARGMHASNGPSQEFQRKHEGSISTKD QGKFVPSEKVMQLRNKLMKFMEDYIYPMESEFYKRAHSTSRWTIHPEEEKLKALAKREGLWNLF IPLDSAARARELLFEDMSHGSPGSSEELLLGAGLTNLEYGYLCEIMGRSIWAPQIFNCGPPDTG NMEPYIIDATTSTGYSYGGFEYTGIPDGIPPLEEYLAAYCSISARPWPAASWKFYVAFSLFRGA SIYAGVYHRWTMGNASGGERARFSGKIANAMVDRAWDIINRENVLREQPARGMHASNGPSQEFQ RKHEGSISTKDQGKFVPSEKVMQLRNKLMKFMEDYIYPMESEFYKRAHSTSRWTIHPEEEKLKA LAKREGLWNLFIPLDSAARARELLFEDMSHGSPGSSEELLLGAGLTNLEYGYLCEIMGRSIWAP QIFNCGPPDTGNMEPYIIDATTSTGYSYGGFEYTGIPDGIPPLEEYLAAYCSISARPWPAASWK FYVAFSLFRGASIYAGVYHRWTMGNASGGERARFSGKIANAMVDRAWDIINRENVLREQPARGM HASNGPSQEFQRKHEGSISTKDQGKFVPSEKVMQLRNKLMKFMEDYIYPMESEFYKRAHSTSRW TIHPEEEKLKALAKREGLWNLFIPLDSAARARELLFEDMSHGSPGSSEELLLGAGLTNLEYGYL CEIMGRSIWAPQIFNCGPPDTGNMEPYIIDATTSTGYSYGGFEYTGIPDGIPPLEEYLAAYCSI SARPWPAASWKFYVAFSLFRGASIYAGVYHRWTMGNASGGERARFSGKIANAMVDRAWDIINRE NVLREQPARGMHASNGPSQEFQRKHEGSISTKDQGKFVPSEKVMQLRNKLMKFMEDYIYPMESE FYKRAHSTSRWTIHPEEEKLKALAKREGLWNLFIPLDSAARARELLFEDMSHGSPGSSEELLLG AGLTNLEYGYLCEIMGRSIWAPQIFNCGPPDTGNME(+) MDIYVRLWAVQFGLHKYLTVVHLIQATWSRILLMQQLVQVILMVDLNILAFQMAFPHWKSTSLH TALSLQDPGRLQVGSFMLPFRFFEGHLYMQEYITDGLWVMLQVVSVLDFLARLLMLWLTVPGIS *(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os07g0675000_circ_g.5

Address

Any questions?

Supported by