Detail information of Os07g0675000_circ_g.4


General Information
CircRNA Name Os07g0675000_circ_g.4
ID in PlantcircBase osa_circ_035290
Alias NA
Organism Oryza sativa
Position chr7: 28555081-28558057  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os07g0675000
Parent gene annotation Similar to predicted protein. (Os07t0675000-01);Protein kinase-l
ike domain containing protein. (Os07t0675000-02);Similar to IBR3
(IBA-RESPONSE 3); acyl-CoA dehydrogenase/ oxidoreductase. (Os07
t0675000-03)
Parent gene strand +
Alternative splicing Os07g0675000_circ_g.3 Os07g0675000_circ_g.5 Os07g0675000_circ_g.6
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os07t0675000-02:9
Os07t0675000-03:5
Os07t0675000-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGATGCACCTCATGGGCATGCAGAGATTACTTTTGAGAATGTGCGCGTTCCAGCCACAAATATT
CTCCTTGGGGAAGGCCGGGGTTTTGAGATTGCTCAGgaccgagttattggtgtacttgattggg
aactatctactttgggtaatcaaatgtgtgatgttgcatacagctctttggtatgaagcacttt
atattttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GACCGAGTTATTGGTGTACTTGATTGGGAACTATCTACTTTGGGTAATCAAATGTGTGATGTTG
CATACAGCTCTTTGGTATGAAGCACTTTATATTTTTAAAATATTGTTATGCATCCTTTTTATGT
TGTGTTTTTGTGCTGTTATTAGACAGTCTTAACTCTTGAAAGAAACATTAAGGAATGATATGTC
TTAACTGAATTTAGTTATATAGTATATATAAATGAGGAGTATACATAGTAATTTCTTTTAGTCA
CTCTAATACTTTGATAGCATTTGTATTTAATTCCAGAGATCTTGACATTTTTTCTGGCCATAGT
TGGTAACAACCAGAGAAATATGTGCATACATACCCCAATTAGAAACAAAGCTGGCATGCATATT
AATTTTTCAATTGATTTAGTGTAATATTTCTTGCATGATAGACTTACATTTGATATGGAATCAG
CTTGCAGCATGTCAATATGTTTACAAAGCAACTATATCTGCTAGCACTGAGTACATATCTTTGG
AATTTTGGATTTGCTATTATCTCAACATGCTATATTTGCTACTCCACTATCAATGTCCCTACTT
TCTAACCACACCTTGTACCAATAACTAATCAATTATGTCTGATAGCACTTAAATTGATTCGTAG
TACTAGGATGTGTCCCATCCATCCAAAATCCCTTATATTTTGGGACGGACGGAGTATGTTTTAC
TATGTGTTCAATGGTATTATTAATCACTTTGATCTTGATTATTATGATTTGTACGTGCAGCCGT
ATATTATTGATGCAACAACTAGTACAGGTTATTCTTATGGTGGATTTGAATATACTGGCATTCC
AGATGGCATTCCCCCACTGGAAGAGTACCTCGCTGCATACTGCTCTATCTCTGTAAGAATCACG
TCTCCTACATCTTGGTCTACAAGTTATTCTTATGGTGGAGTTGAACAACATCTTGATACTGGCT
GAATATATACACCAAACTTATTGCTTCTTTATTCCTCATTAATCATTATATTCTTTAAAATTGT
TTCTCAGGCAAGACCCTGGCCGGCTGCAAGTTGGAAGTTTTATGTTGCCTTTTCGCTTTTTCGA
GGGGCATCTATATATGCAGGAGTATATCACAGATGGACTATGGTACTTATCTGTAACCCTTGAA
ATCTAATTCTGCTTATATATTCTAATTTATTTGAGCTGTCACACAGGGTAATGCTTCAGGTGGT
GAGCGTGCTAGATTTTCTGGCAAGATTGCTAATGCTATGGTTGACCGTGCCTGGGATATCATAA
ATAGAGAAAATGTCCTGAGAGAACAGCCTGCTAGGGGTAATTATATTTTATAATCTCTCCACAG
TCCATACCATATGGTTGGCGAGTGCAAATGCTGCTTATTTTTTTCTTAAATTTCTATGGTTATT
TCGTAATAATAGTGTTGGCAAAGACATGAAAAATGTGGTTATATTTCTTTATTCTTTCCAAGTC
TAATAAAAAAAATTAACTTCTTTACTTTTAATATCAGGTATGCATGCCTCAAATGGCCCATCGC
AAGAATTCCAAAGAAAGCATGAAGGATCAATTTCGACAAAAGATCAAGGAAAATTTGTTCCTAG
TGAAAAGGTTATGCAGCTTCGAAACAAATTGATGAAGTTTATGGAAGATTACATATACCCGATG
GAGAGTGAGTTCTATAAACGCGCACATTCGACCTCAAGGTGGACAATTCATCCAGAAGAAGAAA
AACTAAAAGCCTTAGCAAAGAGAGAGGGACTATGGAACTTGTTTATTCCGGTAACTTTCCCTTT
TTTTATATTAAAACCTTAAGGCCCTTCATTTTTTTCCTGATACATTGATTCATCACACATATTT
GTCGTGTTAGTACTGTAGACTGCATTTATTTTGGACTTTCTTCTTCTAATCAAAATGTTTGATC
TGCAGCTAGACAGTGCTGCTAGAGCAAGAGAGCTTCTGTTTGAGGACATGTCTCATGGTTCTCC
TGGAAGTTCTGAGGAGCTTTTGCTAGGTGCAGGTCTCACAAATCTTGAATATGGATATCTATGT
GAGATTATGGGCCGTTCAATTTGGGCTCCACAAATATTTAACTGTGGTCCACCTGATACAGGCA
ACATGGAGGTAAGATACAAATTATCATATTTTTTTATAAGAAAGACTTTAAAATACATTCAAGT
ATCTTGTTAATAGAGCATATGTTGAGGAGCAACACTCCATATCTCCACCTTGTTATAGGTCCTG
TTGAGATATGGGACTAAGGAGCAACAAAAGCAGTGGCTTGTTCCTTTGTTGGAAGGGAAAATTC
GTTCTGGATTTGCAATGACAGAACCACAAGTTGCATCTTCAGATGCAACAAACATCGAGTGTTC
AATATCAAGGTGAGAAAAAAGGGAAATATTTGCATGCATTTTGTTGCCAGTCCTTGAGGCTGTT
GTTCTTTAATTACAAGTTATTATCTACTTTAAGGGCTAACAGACCTAATTCAGTGTTTATTCGG
GAAACTAATGATACTGTACTTCTTACCACTATCTTGGACATTGTGTAGTTTAAGCTGTTTACGT
TGTGCTTACTCGCAAGTTATTTGCTCTTGACAGGCAAGGAGATTTCTATGTGATAAATGGAACG
AAATGGTGGACCAGTGGGGCTATGGATCCAAGGTGCCAAATTCTTGTATTAATGGTAATTGCAA
CATTTATCAATGAATGCATGCTGTCAATAGTTCAATTTTTTTATTTTAATATTAAAGCTGTTTG
TTTCTCTATATACAGGGGAAGACAGATTTTTCTGCACCTAAACATAAACAGCAATCGATGATTT
TAGTTGATGTCAAAACACCTGGAGTGCAGATAAGGAGACCGTTGTTAGTATTTGGTTTCGATGA
TGCACCTCATGGGCATGCAGAGATTACTTTTGAGAATGTGCGCGTTCCAGCCACAAATATTCTC
CTTGGGGAAGGCCGGGGTTTTGAGATTGCTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.132689374
Functional Information
Coding potential Y
Potential coding position 28555133-28558054(+)
28557958-28556357(+)
Potential amino acid sequence MCDVAYSSLPYIIDATTSTGYSYGGFEYTGIPDGIPPLEEYLAAYCSISARPWPAASWKFYVAF
SLFRGASIYAGVYHRWTMGNASGGERARFSGKIANAMVDRAWDIINRENVLREQPARGMHASNG
PSQEFQRKHEGSISTKDQGKFVPSEKVMQLRNKLMKFMEDYIYPMESEFYKRAHSTSRWTIHPE
EEKLKALAKREGLWNLFIPLDSAARARELLFEDMSHGSPGSSEELLLGAGLTNLEYGYLCEIMG
RSIWAPQIFNCGPPDTGNMEVLLRYGTKEQQKQWLVPLLEGKIRSGFAMTEPQVASSDATNIEC
SISRQGDFYVINGTKWWTSGAMDPRCQILVLMGKTDFSAPKHKQQSMILVDVKTPGVQIRRPLL
VFGFDDAPHGHAEITFENVRVPATNILLGEGRGFEIAQDRVIGVLDWELSTLGNQMCDVAYSSL
PYIIDATTSTGYSYGGFEYTGIPDGIPPLEEYLAAYCSISARPWPAASWKFYVAFSLFRGASIY
AGVYHRWTMGNASGGERARFSGKIANAMVDRAWDIINRENVLREQPARGMHASNGPSQEFQRKH
EGSISTKDQGKFVPSEKVMQLRNKLMKFMEDYIYPMESEFYKRAHSTSRWTIHPEEEKLKALAK
REGLWNLFIPLDSAARARELLFEDMSHGSPGSSEELLLGAGLTNLEYGYLCEIMGRSIWAPQIF
NCGPPDTGNMEVLLRYGTKEQQKQWLVPLLEGKIRSGFAMTEPQVASSDATNIECSISRQGDFY
VINGTKWWTSGAMDPRCQILVLMGKTDFSAPKHKQQSMILVDVKTPGVQIRRPLLVFGFDDAPH
GHAEITFENVRVPATNILLGEGRGFEIAQDRVIGVLDWELSTLGNQMCDVAYSSLPYIIDATTS
TGYSYGGFEYTGIPDGIPPLEEYLAAYCSISARPWPAASWKFYVAFSLFRGASIYAGVYHRWTM
GNASGGERARFSGKIANAMVDRAWDIINRENVLREQPARGMHASNGPSQEFQRKHEGSISTKDQ
GKFVPSEKVMQLRNKLMKFMEDYIYPMESEFYKRAHSTSRWTIHPEEEKLKALAKREGLWNLFI
PLDSAARARELLFEDMSHGSPGSSEELLLGAGLTNLEYGYLCEIMGRSIWAPQIFNCGPPDTGN
MEVLLRYGTKEQQKQWLVPLLEGKIRSGFAMTEPQVASSDATNIECSISRQGDFYVINGTKWWT
SGAMDPRCQILVLMGKTDFSAPKHKQQSMILVDVKTPGVQIRRPLLVFGFDDAPHGHAEITFEN
VRVPATNILLGEGRGFEIAQDRVIGVLDWELSTLGNQMCDVAYSSLPYIIDATTSTGYSYGGFE
YTGIPDGIPPLEEYLAAYCSISARPWPAASWKFYVAFSLFRGASIYAGVYHRWTMGNASGGERA
RFSGKIANAMVDRAWDIINRENVLREQPARGMHASNGPSQEFQRKHEGSISTKDQGKFVPSEKV
MQLRNKLMKFMEDYIYPMESEFYKRAHSTSRWTIHPEEEKLKALAKREGLWNLFIPLDSAARAR
ELLFEDMSHGSPGSSEELLLGAGLTNLEYGYLCEIMGRSIWAPQIFNCGPPDTGNMEVLLRYGT
KEQQKQWLVPLLEGKIRSGFAMTEPQVASSDATNIECSISRQGDFYVINGTKWWTSGAMDPRCQ
ILVLMGKTDFSAPKHKQQSMILVDVKTPGVQIRRPLLVFGFDDAPHGHAEITFENVRVPATNIL
LGEGRGFEIAQ(+)
MMHLMGMQRLLLRMCAFQPQIFSLGKAGVLRLLRTELLVYLIGNYLLWVIKCVMLHTALCRILL
MQQLVQVILMVDLNILAFQMAFPHWKSTSLHTALSLQDPGRLQVGSFMLPFRFFEGHLYMQEYI
TDGLWVMLQVVSVLDFLARLLMLWLTVPGIS*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017