Detail information of BGIOSGA022335_circ_ag.2


General Information
CircRNA Name BGIOSGA022335_circ_ag.2
ID in PlantcircBase osi_circ_016635
Alias Chr06:2556490_2561786(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr6: 3250050-3254929  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA022335_circ_ag.1 BGIOSGA022335_circ_ag.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   NN-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATTAATACCATTCTCATTTAGGAGTAGCTAGTCCACAGAAATAAAATAAAATAAAATAGATGC
ATTCGATTAATATCATTCTCATTTAGGAGTAGGTAGgcctcttgctcggatgggagctacagtt
actggaattgatgctgttgacaaaaatataaagattgcacgtgtccatgctgtatgtataagat
tatctagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCCTCTTGCTCGGATGGGAGCTACAGTTACTGGAATTGATGCTGTTGACAAAAATATAAAGATT
GCACGTGTCCATGCTGTATGTATAAGATTATCTAGTCATCTTAATATATTTATTAGATAGGCAC
ACATTTGTTTCTCTCTTGATATATTAAAACAAAGTTATACTACTAAGGTTTAACTTACTGGATT
ACTCTGGCGTCCTTAAGAAGTTATATTATGATGATGTAACACTACACAATACACATAATGCTAA
ATGGAGCTTCAAATTTGTTTAGTTGTTCTCATCATATTGCATTGTATGGTCATCATATATATGA
TATTCATACTTTGAGGACTGATGATACCCATATCCTTTTCGTTAACTTTTGGTTATGATCTCAT
AAAGGCAGAAATGCCCAAGTAGACTCAATAATTTTATTATCTTTCCGCCAATGATTTTTTTTTA
AAAAAATTTTGTTTTCACATTCACAGGCATCCGATCCATCAACTGCTTCCATAGAATATTTCTG
CACAACAGCTGGTCTCTCTCTCTCTCTCTCTCTCTAATGCTGCATTTGTACTTCCTGTCAGTTT
AATCATATTGCTACTAATATATAAGTTTTAGTTAAAAAATGAATTGCTTGACCATTATTTTCTT
TCAAGCAAACTAGCTTAGTGCCTACTTTGTGATGTACGAGAAATAAATATACCCCGTCTAGTCA
TGATTGGTTGTCCTAAACATCATATATTCAAGACTGGATGTAGTACTATAATAATCTAAAGTAA
AAAAAGAAGAGCAAAAACTGATTATCCTCAAATCTAAATATTTTTTACATGTCCATATGGGATT
AGATAATCACCTAGCATATGCAATATTTGCCTTCCTTCCTTTTTTTTAATATAAAAAGTAGAAA
TATGTAATGTCTATATATGTAGCAGGGAAGATCCTGAAAAATGAGGTCGTATTAGAACACACCA
TCACTCCCCAACGCCTACTTTTATAAGAGCCGTGAATGAAGACTAAAAGATTGGCAGAGAAACT
GGATGCATTTATCCACTCATAAGAGTGTACATTTGCTTCTACTTTTTTCTTTCTTTTTTCATTT
CACCTTTATGAACTATAGTTTATCCTTTCAAATAATATATCTAGCCTGCCGATCTGCTCACATG
TAAATAAGACTGTGTCGTTCTTGGGAAACATTGGCAGCACACATTTTCTACAGCGGTCTAATGC
AGCTAGCCTCCCAATAATTATCATAACAAATTAACATTACTAAAGGAAGAAAAAAAATCCCAGT
TTCTGTAAGAACAAATTTAGCATTCAAAAGATTTTTCTCTCTTGATTGTGACCAAAACCAAACT
TATGTGAATATTGTTCTTGTGCAGAGGATTTGGTGAAAGAGAACAAACAATTTGATGCTGTGAT
TTCTCTTGAGGTATACACATTTTCATCCCATCTATGCCCTTCCTGTATGTCAAACAAGAAGCTT
ATTTATTGTGGAAGGCTGCAGAATCTGGAATTCAGAGATGCCTCGTCAATCTCTGATTGGAGAG
CCTTTTTAATGTTATATTAGACAATGCTTTGGTTGTTCTGTTCTTGTAAATTATATAGCTTTCC
ATGCGTGCTTGCTAGTTCCTCTGATTATATTACTAATTTGCTGCAATTGATCCCCGCAAAAATA
AAAATAAAAATAAAATTGCTTCACTTGATAAGAACTGATCTATTTCATGTACTCCTAATCCAAA
TTTCGGGAGTCATGTATGGAATATCTGGAAGACCTATGTAGCTTACAGCAGAATATCGTACAGA
TGCTGCATGTTGTTCTTTAACCTTTCTTGATGAAAAATAATGTATTGCTGTGCGCCTGTGCCAT
CATGAGTGCAGACTAACCTTAATATACTTTCAGGTGATCGAGCATGTGGCTAATCCCTCGGGGT
TCTGTGAATCTTTGTCAGCTTTGACAGTTCCTAATGGGGCCACTGTGATTTCTACAATCAACCG
CTCAATGAGGGCATATGCAACTGCAATAGTCGCTGCGGAGTATATTCTTAATTGGGTTAGTCTC
TATCTCTCTAGCATATTTTGGCCTCATACCCTCAGGTATATACTGCATTGTGTAGTCCTCTGTG
TTGGAGAAAAAAATGCCATTCCTTCATGGTTAGCTTCTCGGAATCTTGATAGTGCAATTTATAC
CTCAAACCTTCCCAATGATTAATGCTTCATAGCCATACAGTGGCACACAAAATTGGTTGTCAGA
ATCATCCAATATTCAGGTGTGTACAGTAGTAAAAGAAATATATAGATTCTGTTCGTCATAATAG
GTATTCATGGAGCATACGCAGGATGTAGTGTTATCTTGCCCAACGTCATTGTCTCACATATTAC
ACAAGTGAAGTAGTGAATACATGCTTGCGGTGAAATTAGTTGCCAACAGGAGCATGTTTCTTAG
TGTTGCCAGTTAATTGTTCTGTTGTTTGTTAGGTATGTTTCGAATATGAAAAAAAAGAAAGGAA
AGAAAAGTGCATGTACCATCTTCAAACTGTTTGATTATAGGGTCAGACTAACTCGTGATGTTCC
ACTGAATGCTATCCAATGATTAGTTTCAAGTCTTGTAAAATATTTTCCCTGTGCTTTTACAGCT
TCCTAAAGGCACACATCAGTGGTCCAAACTAGTTACCCCTGAGGAGCTGGTCCTTATACTGGAA
AGAGCTTCAATCTCTGTAAGTTCTTCATCACTATGCTAAAAGTTTATCTTTTGTTGTTAGTCAT
GTAACTGAAAACACATCCATCACCAGGTACAAGAAATGGCCGGGTTTGTGTATAATCCGCTGCG
TGGAGAGTGGTCTCTGTCAGATGATCTTACTGTAAATTATATTGCTTATGGCATGAAGAAAGTC
GAAACACCCTCTGAGTCAAATTGACCTCACATCATCAAAATATTTTCGTCGGGAACTAAAACGT
GCGCCACTTGAAAATTTTGGCAGGGATTACAATCAAATAGCACACTGAAAAGTTTTGACTTCTC
TTTTTGTTAATTTCGGAAAACAGGGAGCATGTAGTAGTGTCATGGGGAAGCCCCACTGAGGTGT
GCAAACTGCTAAGTTGATAGCAGTGGCAACAGCTAACAAGTAAAGTAGGGGTAGCTTTGTCTCT
TTGATTGTAACTACTAGTACTTCTTTCAAACTTTCCTTCATATAAATAAGTACATTTCAGACGA
GTTCACCAAAGTTCTAGCTGCGATTGCCCTTTTGTTAAACTATATGCAGATACTGTTTCTCTTG
TTATATAGATGAATTCCCTCTTTCCTTTCTATTTACCATCTTCTATGGAGTACGAATGCATGAC
CCCATGAAACTTAATGTTTCACGCTTCATAATTCACAACCTGTCAGTGTAACCACAAGCCTCAG
AACTTTTTACATGAGAACTACCTCTAATATCTTCAGCAAACAGCCAACAAAGCATGGCTTTTGA
TAGAAAACCAGAGTGAAATTCCCAGGACTGTCTTACGGTTTTATATAAAGGGATAATAAAACAT
AAACATTTAAACCATAAAACATATGACTGTGTCACAAGTTATAATATACTCCCTCCGTCCTATA
ATATAAGGGATTTTCAGTTTTTGCTTGCAATGTTTGACCATTCGTCTTATTCAATTTATTTTGT
AAATATAAAAAATAAAAAGTTGTGCTTAAAGTACTGTAAATAATAAATGAAGTCACAAATAAAA
TAATTAATAATTTCAAAAAAAATTGAATAAGACGAGTGGTCAAACGTTGTAAGCAAAACTCAAA
ATTTCTTATATTATGGGGACGGAGTATATTATTCTCTATGACTTTGATCATAAAATGAGTTACT
CTTACTTTCTTTTATTATTTACACTGGACTGCACCAGTGTAAATCAGCCCCCTGTTTAGCTTCG
CGCCCGCCGTTTTAGAGAAAAGAAAACTATGCTCACGTGCTCAATTACTATGATAATATTTGAT
CCGAGGTTGACAACTAAATAGTACAAAATATAATAATTAAAAATTTTATAGGATAACTTCAAAC
CTAGGAGGAGACGAAACAAACACGGCTGCCTGCCTGAGGCTGAGAGAGTCAATATTTATGGTTT
TGCATAGCCTATTTTTCTACTGCACGGAGGATAAATCTGGGCCGTCCTTCAGTTATCCGACGGC
CCAGATATTCCTAGCGGGCCCTCCTAGTTCGTCCGTCCTATAATTACCTCGACCACCACCGCCG
CCGCCGTATCGGCGATCACACTCTCGCTGCCACCGGTGAAGTCCAGGCTCGAGCAAGCGATGCT
CCGCCGCCTTCCTCCGTGCCTCCGGCGAGCGCTCCCCGCCTCCTCCTCCTCCACCTCCGCTCCT
CGCCGCGGCGTTCGCCTCGCGGAGCATGGCCAATCCCCTCCTCAATCCGCGCCCCCACCGCCTT
CTCCGGCTACGCAGAAGGACGGCGCGGTGCGTACTCCGGGTGGCGGATCCGCCGCCTCGTCGCT
GAACCCCGCCGAGGTCGCCCATTTCGCCTCCTTTGCTGAGACCTGGTGAGATGAGATGAGATGA
GATCGATCCCCTCGTCTGGCCTCTACTCCCTCCTCTTGCTGGCCGTGTGGTTACGTCTCATTCG
AGATGATGAACCTACTGCTCCTTCGCTAGATGCTTTGGCCAAATTTTTATTTAGTGCAGTGGCC
TTGATCCTGTTTTGATTCTAGTTTTAGGAATAATTTGTACTACGGTGATGAATACTGCTTCTAG
CACGAGTGCGCTATAGCTCTCAACAAATTTTTTTTATTGCATTCGATTAATACCATTCTCATTT
AGGAGTAGCTAGTCCACAGAAATAAAATAAAATAAAATAGATGCATTCGATTAATATCATTCTC
ATTTAGGAGTAGGTAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021