Detail information of BGIOSGA022335_circ_ag.3


General Information
CircRNA Name BGIOSGA022335_circ_ag.3
ID in PlantcircBase osi_circ_016638
Alias Chr06:2557857_2562329(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr6: 3251417-3254929  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA022335_circ_ag.1 BGIOSGA022335_circ_ag.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   NN-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATTAATACCATTCTCATTTAGGAGTAGCTAGTCCACAGAAATAAAATAAAATAAAATAGATGC
ATTCGATTAATATCATTCTCATTTAGGAGTAGGTAGgaggatttggtgaaagagaacaaacaat
ttgatgctgtgatttctcttgaggtatacacattttcatcccatctatgcccttcctgtatgtc
aaacaaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGGATTTGGTGAAAGAGAACAAACAATTTGATGCTGTGATTTCTCTTGAGGTATACACATTTT
CATCCCATCTATGCCCTTCCTGTATGTCAAACAAGAAGCTTATTTATTGTGGAAGGCTGCAGAA
TCTGGAATTCAGAGATGCCTCGTCAATCTCTGATTGGAGAGCCTTTTTAATGTTATATTAGACA
ATGCTTTGGTTGTTCTGTTCTTGTAAATTATATAGCTTTCCATGCGTGCTTGCTAGTTCCTCTG
ATTATATTACTAATTTGCTGCAATTGATCCCCGCAAAAATAAAAATAAAAATAAAATTGCTTCA
CTTGATAAGAACTGATCTATTTCATGTACTCCTAATCCAAATTTCGGGAGTCATGTATGGAATA
TCTGGAAGACCTATGTAGCTTACAGCAGAATATCGTACAGATGCTGCATGTTGTTCTTTAACCT
TTCTTGATGAAAAATAATGTATTGCTGTGCGCCTGTGCCATCATGAGTGCAGACTAACCTTAAT
ATACTTTCAGGTGATCGAGCATGTGGCTAATCCCTCGGGGTTCTGTGAATCTTTGTCAGCTTTG
ACAGTTCCTAATGGGGCCACTGTGATTTCTACAATCAACCGCTCAATGAGGGCATATGCAACTG
CAATAGTCGCTGCGGAGTATATTCTTAATTGGGTTAGTCTCTATCTCTCTAGCATATTTTGGCC
TCATACCCTCAGGTATATACTGCATTGTGTAGTCCTCTGTGTTGGAGAAAAAAATGCCATTCCT
TCATGGTTAGCTTCTCGGAATCTTGATAGTGCAATTTATACCTCAAACCTTCCCAATGATTAAT
GCTTCATAGCCATACAGTGGCACACAAAATTGGTTGTCAGAATCATCCAATATTCAGGTGTGTA
CAGTAGTAAAAGAAATATATAGATTCTGTTCGTCATAATAGGTATTCATGGAGCATACGCAGGA
TGTAGTGTTATCTTGCCCAACGTCATTGTCTCACATATTACACAAGTGAAGTAGTGAATACATG
CTTGCGGTGAAATTAGTTGCCAACAGGAGCATGTTTCTTAGTGTTGCCAGTTAATTGTTCTGTT
GTTTGTTAGGTATGTTTCGAATATGAAAAAAAAGAAAGGAAAGAAAAGTGCATGTACCATCTTC
AAACTGTTTGATTATAGGGTCAGACTAACTCGTGATGTTCCACTGAATGCTATCCAATGATTAG
TTTCAAGTCTTGTAAAATATTTTCCCTGTGCTTTTACAGCTTCCTAAAGGCACACATCAGTGGT
CCAAACTAGTTACCCCTGAGGAGCTGGTCCTTATACTGGAAAGAGCTTCAATCTCTGTAAGTTC
TTCATCACTATGCTAAAAGTTTATCTTTTGTTGTTAGTCATGTAACTGAAAACACATCCATCAC
CAGGTACAAGAAATGGCCGGGTTTGTGTATAATCCGCTGCGTGGAGAGTGGTCTCTGTCAGATG
ATCTTACTGTAAATTATATTGCTTATGGCATGAAGAAAGTCGAAACACCCTCTGAGTCAAATTG
ACCTCACATCATCAAAATATTTTCGTCGGGAACTAAAACGTGCGCCACTTGAAAATTTTGGCAG
GGATTACAATCAAATAGCACACTGAAAAGTTTTGACTTCTCTTTTTGTTAATTTCGGAAAACAG
GGAGCATGTAGTAGTGTCATGGGGAAGCCCCACTGAGGTGTGCAAACTGCTAAGTTGATAGCAG
TGGCAACAGCTAACAAGTAAAGTAGGGGTAGCTTTGTCTCTTTGATTGTAACTACTAGTACTTC
TTTCAAACTTTCCTTCATATAAATAAGTACATTTCAGACGAGTTCACCAAAGTTCTAGCTGCGA
TTGCCCTTTTGTTAAACTATATGCAGATACTGTTTCTCTTGTTATATAGATGAATTCCCTCTTT
CCTTTCTATTTACCATCTTCTATGGAGTACGAATGCATGACCCCATGAAACTTAATGTTTCACG
CTTCATAATTCACAACCTGTCAGTGTAACCACAAGCCTCAGAACTTTTTACATGAGAACTACCT
CTAATATCTTCAGCAAACAGCCAACAAAGCATGGCTTTTGATAGAAAACCAGAGTGAAATTCCC
AGGACTGTCTTACGGTTTTATATAAAGGGATAATAAAACATAAACATTTAAACCATAAAACATA
TGACTGTGTCACAAGTTATAATATACTCCCTCCGTCCTATAATATAAGGGATTTTCAGTTTTTG
CTTGCAATGTTTGACCATTCGTCTTATTCAATTTATTTTGTAAATATAAAAAATAAAAAGTTGT
GCTTAAAGTACTGTAAATAATAAATGAAGTCACAAATAAAATAATTAATAATTTCAAAAAAAAT
TGAATAAGACGAGTGGTCAAACGTTGTAAGCAAAACTCAAAATTTCTTATATTATGGGGACGGA
GTATATTATTCTCTATGACTTTGATCATAAAATGAGTTACTCTTACTTTCTTTTATTATTTACA
CTGGACTGCACCAGTGTAAATCAGCCCCCTGTTTAGCTTCGCGCCCGCCGTTTTAGAGAAAAGA
AAACTATGCTCACGTGCTCAATTACTATGATAATATTTGATCCGAGGTTGACAACTAAATAGTA
CAAAATATAATAATTAAAAATTTTATAGGATAACTTCAAACCTAGGAGGAGACGAAACAAACAC
GGCTGCCTGCCTGAGGCTGAGAGAGTCAATATTTATGGTTTTGCATAGCCTATTTTTCTACTGC
ACGGAGGATAAATCTGGGCCGTCCTTCAGTTATCCGACGGCCCAGATATTCCTAGCGGGCCCTC
CTAGTTCGTCCGTCCTATAATTACCTCGACCACCACCGCCGCCGCCGTATCGGCGATCACACTC
TCGCTGCCACCGGTGAAGTCCAGGCTCGAGCAAGCGATGCTCCGCCGCCTTCCTCCGTGCCTCC
GGCGAGCGCTCCCCGCCTCCTCCTCCTCCACCTCCGCTCCTCGCCGCGGCGTTCGCCTCGCGGA
GCATGGCCAATCCCCTCCTCAATCCGCGCCCCCACCGCCTTCTCCGGCTACGCAGAAGGACGGC
GCGGTGCGTACTCCGGGTGGCGGATCCGCCGCCTCGTCGCTGAACCCCGCCGAGGTCGCCCATT
TCGCCTCCTTTGCTGAGACCTGGTGAGATGAGATGAGATGAGATCGATCCCCTCGTCTGGCCTC
TACTCCCTCCTCTTGCTGGCCGTGTGGTTACGTCTCATTCGAGATGATGAACCTACTGCTCCTT
CGCTAGATGCTTTGGCCAAATTTTTATTTAGTGCAGTGGCCTTGATCCTGTTTTGATTCTAGTT
TTAGGAATAATTTGTACTACGGTGATGAATACTGCTTCTAGCACGAGTGCGCTATAGCTCTCAA
CAAATTTTTTTTATTGCATTCGATTAATACCATTCTCATTTAGGAGTAGCTAGTCCACAGAAAT
AAAATAAAATAAAATAGATGCATTCGATTAATATCATTCTCATTTAGGAGTAGGTAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021