Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d030266_circ_g.11 |
ID in PlantcircBase | zma_circ_000698 |
Alias | circ2579 |
Organism | Zea mays |
Position | chr1: 117672022-117676325 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRCexplor2 |
Parent gene | Zm00001d030266 |
Parent gene annotation |
Callose synthase 10 |
Parent gene strand | + |
Alternative splicing | Zm00001d030266_circ_g.2 Zm00001d030266_circ_g.3 Zm00001d030266_circ_g.4 Zm00001d030266_circ_g.5 Zm00001d030266_circ_g.6 Zm00001d030266_circ_g.7 Zm00001d030266_circ_g.8 Zm00001d030266_circ_g.9 Zm00001d030266_circ_g.10 Zm00001d030266_circ_g.12 Zm00001d030266_circ_g.13 |
Support reads | 2 |
Tissues | seedling leaves |
Exon boundary | No-Yes |
Splicing signals | GT-TA |
Number of exons covered | Zm00001d030266_T088:2 Zm00001d030266_T052:2 Zm00001d030266_T021:2 Zm00001d030266_T013:2 Zm00001d030266_T080:2 Zm00001d030266_T047:2 Zm00001d030266_T096:1 Zm00001d030266_T077:2 Zm00001d030266_T048:2 Zm00001d030266_T074:2 Zm00001d030266_T019:2 Zm00001d030266_T033:2 Zm00001d030266_T090:2 Zm00001d030266_T093:2 Zm00001d030266_T061:2 Zm00001d030266_T054:2 Zm00001d030266_T089:2 Zm00001d030266_T027:2 Zm00001d030266_T085:2 Zm00001d030266_T018:2 Zm00001d030266_T031:2 Zm00001d030266_T081:2 Zm00001d030266_T068:2 Zm00001d030266_T036:2 Zm00001d030266_T001:2 Zm00001d030266_T072:2 Zm00001d030266_T041:2 Zm00001d030266_T095:2 Zm00001d030266_T057:1 Zm00001d030266_T056:2 Zm00001d030266_T045:2 Zm00001d030266_T008:2 Zm00001d030266_T004:2 Zm00001d030266_T007:2 Zm00001d030266_T035:2 Zm00001d030266_T023:2 Zm00001d030266_T005:2 Zm00001d030266_T039:2 Zm00001d030266_T079:2 Zm00001d030266_T011:2 Zm00001d030266_T016:2 Zm00001d030266_T059:2 Zm00001d030266_T069:2 Zm00001d030266_T064:2 Zm00001d030266_T073:2 Zm00001d030266_T087:2 Zm00001d030266_T025:2 Zm00001d030266_T028:2 Zm00001d030266_T083:2 Zm00001d030266_T092:2 Zm00001d030266_T014:2 Zm00001d030266_T063:2 Zm00001d030266_T050:2 Zm00001d030266_T066:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.012139734 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chen et al., 2017b |