Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d030266_circ_g.11 |
| ID in PlantcircBase | zma_circ_000698 |
| Alias | circ2579 |
| Organism | Zea mays |
| Position | chr1: 117672022-117676325 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | u-circRNA |
| Identification method | CIRCexplor2 |
| Parent gene | Zm00001d030266 |
| Parent gene annotation |
Callose synthase 10 |
| Parent gene strand | + |
| Alternative splicing | Zm00001d030266_circ_g.2 Zm00001d030266_circ_g.3 Zm00001d030266_circ_g.4 Zm00001d030266_circ_g.5 Zm00001d030266_circ_g.6 Zm00001d030266_circ_g.7 Zm00001d030266_circ_g.8 Zm00001d030266_circ_g.9 Zm00001d030266_circ_g.10 Zm00001d030266_circ_g.12 Zm00001d030266_circ_g.13 |
| Support reads | 2 |
| Tissues | seedling leaves |
| Exon boundary | No-Yes |
| Splicing signals | GT-TA |
| Number of exons covered | Zm00001d030266_T088:2 Zm00001d030266_T052:2 Zm00001d030266_T021:2 Zm00001d030266_T013:2 Zm00001d030266_T080:2 Zm00001d030266_T047:2 Zm00001d030266_T096:1 Zm00001d030266_T077:2 Zm00001d030266_T048:2 Zm00001d030266_T074:2 Zm00001d030266_T019:2 Zm00001d030266_T033:2 Zm00001d030266_T090:2 Zm00001d030266_T093:2 Zm00001d030266_T061:2 Zm00001d030266_T054:2 Zm00001d030266_T089:2 Zm00001d030266_T027:2 Zm00001d030266_T085:2 Zm00001d030266_T018:2 Zm00001d030266_T031:2 Zm00001d030266_T081:2 Zm00001d030266_T068:2 Zm00001d030266_T036:2 Zm00001d030266_T001:2 Zm00001d030266_T072:2 Zm00001d030266_T041:2 Zm00001d030266_T095:2 Zm00001d030266_T057:1 Zm00001d030266_T056:2 Zm00001d030266_T045:2 Zm00001d030266_T008:2 Zm00001d030266_T004:2 Zm00001d030266_T007:2 Zm00001d030266_T035:2 Zm00001d030266_T023:2 Zm00001d030266_T005:2 Zm00001d030266_T039:2 Zm00001d030266_T079:2 Zm00001d030266_T011:2 Zm00001d030266_T016:2 Zm00001d030266_T059:2 Zm00001d030266_T069:2 Zm00001d030266_T064:2 Zm00001d030266_T073:2 Zm00001d030266_T087:2 Zm00001d030266_T025:2 Zm00001d030266_T028:2 Zm00001d030266_T083:2 Zm00001d030266_T092:2 Zm00001d030266_T014:2 Zm00001d030266_T063:2 Zm00001d030266_T050:2 Zm00001d030266_T066:2 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.012139734 |
| Functional Information | |
|---|---|
| Coding potential | N |
| Potential coding position |
NA |
| Potential amino acid sequence |
NA |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chen et al., 2017b |