Detail information of Zm00001d030266_circ_g.11


General Information
CircRNA Name Zm00001d030266_circ_g.11
ID in PlantcircBase zma_circ_000698
Alias circ2579
Organism Zea mays
Position chr1: 117672022-117676325  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d030266
Parent gene annotation Callose synthase 10
Parent gene strand +
Alternative splicing Zm00001d030266_circ_g.2 Zm00001d030266_circ_g.3 Zm00001d030266_circ_g.4 Zm00001d030266_circ_g.5 Zm00001d030266_circ_g.6 Zm00001d030266_circ_g.7 Zm00001d030266_circ_g.8 Zm00001d030266_circ_g.9 Zm00001d030266_circ_g.10 Zm00001d030266_circ_g.12 Zm00001d030266_circ_g.13
Support reads 2
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered Zm00001d030266_T088:2
Zm00001d030266_T052:2
Zm00001d030266_T021:2
Zm00001d030266_T013:2
Zm00001d030266_T080:2
Zm00001d030266_T047:2
Zm00001d030266_T096:1
Zm00001d030266_T077:2
Zm00001d030266_T048:2
Zm00001d030266_T074:2
Zm00001d030266_T019:2
Zm00001d030266_T033:2
Zm00001d030266_T090:2
Zm00001d030266_T093:2
Zm00001d030266_T061:2
Zm00001d030266_T054:2
Zm00001d030266_T089:2
Zm00001d030266_T027:2
Zm00001d030266_T085:2
Zm00001d030266_T018:2
Zm00001d030266_T031:2
Zm00001d030266_T081:2
Zm00001d030266_T068:2
Zm00001d030266_T036:2
Zm00001d030266_T001:2
Zm00001d030266_T072:2
Zm00001d030266_T041:2
Zm00001d030266_T095:2
Zm00001d030266_T057:1
Zm00001d030266_T056:2
Zm00001d030266_T045:2
Zm00001d030266_T008:2
Zm00001d030266_T004:2
Zm00001d030266_T007:2
Zm00001d030266_T035:2
Zm00001d030266_T023:2
Zm00001d030266_T005:2
Zm00001d030266_T039:2
Zm00001d030266_T079:2
Zm00001d030266_T011:2
Zm00001d030266_T016:2
Zm00001d030266_T059:2
Zm00001d030266_T069:2
Zm00001d030266_T064:2
Zm00001d030266_T073:2
Zm00001d030266_T087:2
Zm00001d030266_T025:2
Zm00001d030266_T028:2
Zm00001d030266_T083:2
Zm00001d030266_T092:2
Zm00001d030266_T014:2
Zm00001d030266_T063:2
Zm00001d030266_T050:2
Zm00001d030266_T066:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCCTGGGAACCCCAAGCTTGGTGAAGGCAAACCTGAGAACCAAAACCATGCCATAATCTTCACT
CGAGGAGATGCAGTTCAGACGATCGATATGAATCAGgaaatgaggctcttcgggttgctttcat
acacgaagaggaaatcatatcaagggatggtaaggctacaacaagagagtattattccaagctt
gtgaaggc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAAATGAGGCTCTTCGGGTTGCTTTCATACACGAAGAGGAAATCATATCAAGGGATGGTAAGGC
TACAACAAGAGAGTATTATTCCAAGCTTGTGAAGGCTGATGTTCATGGCAAAGACCAAGTCAGT
ATATTTTCTTAAGTTTATTAATATTTTTTTGCCAATGTCACCGTGCATTTATCTTGCCTACTTA
AAATCAATTACGACACTGTCAATCTACCATTCACATCAAGTCTTGATGATTTATGTTTCGGACC
AATAGGTGAAAATTTATGTAGCATGTGTTTTCTTGGCTTGGTGGTCAATCATGTACCTAGTAAT
AATTGCATATTGATGCTCTACCTTTCTTTTACCACTTACTAATCATATTGATGCTAGCTCCACT
TGTTCCTAGCCTCAAGCAGACAACGTAGGGAAACCCGTTAGCGGGAGGAGAGGCTCAGCCGGTG
TTAGGTAGGGGAGTGGTGGCGCTGAGGGCGGTGGGACATCGTAGGGTTGCGTCGCCAGGAGAGC
CGATGGTGAAGGTTGTGGCGGAGAGGTACCCGTGGTCGGTCTACGCCACATGGAGATGGCCCCG
GTCTAGGGGTTGTAGAACAACGGCCACACCGGACTGCCGCAACAACCGGTGATCGCTGTTAGAG
CTAGGAGGCTGACAAGGAGCTCTAGGGGTGGGGACGGTAGGAGGGCATGCAAGGGCCCCGTCGA
CGCGAGGCGAGGTGCCTTGCCAACAGAGGACGCGCTGGAGTGTCGTGGCGAAGGCAGGGGACTC
TACATCCATGCTGAGCTCCTCGAGGAGAAGCTCGTTGCGGACGTCATAGAAGGTGGGGAACGAC
AGAGTTCCGCTTGATGAGGGCCTTCAGGCAGTTCAGCACGAGTGTGCGGGTTAGGCACGAGCTT
GCCGAGATAGCGGAGGGAGTCCGTTATGCCCTTCATTCGTCGGCAGTTTTCGCTGACGGAGAGG
TCCCCCTAGGAGAAGAGGTGGAACGATGCGTTGAGGTGGAGGGCGTGGGCCTCCCTGTTGCCAA
AGAACCGGGCCTCCAGGGCGAACTAGGCCTGTCGAGCCCCCCCCTCGCGGACGATGTCCTGTAG
CTTGACGTTGACGGTGAGCGTGCCGATGAGACACAAGAGGATGCCCATCTGGACCTATGATGGG
GGTAGCGGGGAGACGGGGTTGACGAGGACATGGTCGTTGAGGATGTTGCGCTGGAGCGTGAGGA
GCACTTGACACGCCAGCGAGCATAATGGGTGGAAGTTGGGTCAAGGACAACGGATACGAACGAC
CGAATGTTCTGGACTCTAGCAACCTAAGCATGAAGGGTGGCGATGTCAGTGGCACTGAGCCCAG
AGGTAGGGTTAGTCCCTGGAGCCACGGGGAGGGCACAACGTCGCGGCCGAGGAGAAGCCTCTTA
ACTTCAGCCATCTGAGAGGTCAGGGCATCAACCACGTGGTGCTTGTGCTCACAGGCGATGGCCA
TGGCACGCTCGCAATCCCGAGCATAAACCACAACTGCCTGGAACCGTTCCCAACGACGATCGAG
GGATGGGAGGAATGGGGGGATGGGAGCGAGATAACGAGCCTGCGGTGGAGGTGGTGTGGTAGGA
TGCATCGGAGTCAACCACCTAGTAGGAGGGGGTGGTGGTGTCATCGCCATGGTGTTGAAGGCAG
CGACGAGGGATGTTGAGTCCCACCCTTTAGCCATTGGAGACAAGGGTGTCGTAGTTGGGGTCCC
CGGAGGCGGGGCGGAGCCAGAGTCGTCGGAGGCACGCCGTGAGGAGGGCCGACGTAGGAGGACA
AGGCAGGGAGGCACCCGGGGCATGGCCCGGTCACATGGAGATGGCCCCGCTCTAGGGGTTGTAG
AATGACGACCACTTGGAGATGGTCCCGACAGGAGGGACCACAGCGGGTGGAGCCATCACTCCCG
TGGCCGCCCTTGCAGGTGACCTCTATCGGCGGTGGGTGCCGGATGAGGGGCTGTAGGCACAGCG
GGGGGATGAGGTGTCATAGGCATGACGGGGGGAGGATGGGTAGGAGCCTCGGTCGACGAAGGGC
CAGGGGCCTGGCCCCTTGAAGACGCCTGACCACTGATAGGCACGCTGTAGAGGGTCGGGGCGGT
AGCGGTTCTCTCAGTCTCCATGATGAGCTCCTTGTGGAGAAGCTTGTTGTGGACGACGTGGAAG
GTGGGGAAGGGCACATACCTCTTGATGAGAGCCTTCAGGTGGCCGTAGCGGGGTTGAGGCCACA
CAGAAGGTTCAACATCAATGTACGGTCGACGACGGGCTCACCGAGGTCGAGGAGGGAGTCCGCC
ATGCCCTTCATCTGGCGACAGTACTCACTCACGGAGAGGTCCCCTAAGAGAACAAGTGGAACTA
CGCGTCGAGGTCGAGCGCGCGAGCTTCCCGGTTCCAGAGGAACTGCTCCTCGAGTGCGATCCAC
GCCTGGTAAGCGGTGCCCTTCTGGTCGCGGACGATGTCCTAGAGCTCGACGGTGATGGTGCTGT
TGAGCCACGAGAGGACCATGCTATCCATATGGTACCAAGATGGGGACACCAGGGCGACGGCGTC
GTCGAGGACGTGGTCGGCGAGAGCGAACAACCAGAGTGTGAGGATCACCTGAGCGCGCCAACGA
GGGTAGTGAGAGGACGCCTGGTCCAACACAACAAACATGAGGTACTGAATGTTGTGAACCCCGA
CGGCCTGAGCGTGGAGGGCGGTGATGGTGTCGGTGTCGAGTTCGGAGGTGTGGGGAGCCTCAGG
AGCGAGTGAGCGACCGAGGGGTTGGGGTCTGACCGCGACTGAGGAGGCGCTACGCAGCGGCCAT
TTGAGTTGTCAAGGTGGCGCCAATGGCGCTCTGTTGCTCCAGAGCAAGGGTCGCAGCACGCTCG
CGCTCCTAGGAGGCGGCGACAACCGCCTAGATGGTGGCGATAGCTGCAACCAACGCGGAGGAGG
CAGGGGGAGGAGCCGACGAGGATGTGACGATGTCGGTCCACGAGGGAGTGGCGAGAGTGGGGTG
GTGGGCGGGGAAACCCGGTGGGGAACACTGGGCAGCGAAGGCAGCATGGGAGGCGCCGGGGAGG
GCCCAAGTTCGGCGATGTAGGGGGCCCCACCCATGGCAAGGAAGGCGCACTCTCCAACGGAGAA
GGCCGCGGTGACAATGCGGGTGGCGGTGGTCAGGTCTGCGCCTAGGACCGCGGCGGAACTTGTG
CCCAGCCCTAGGGCCGAGGTGGCGAGCTGGCTGGGGTCGGGGTGGGATCCTTGGCGGAGCAGGG
GAAGAGAGGGCGGCGGCCAGGGAAGAGGGCCTGGCGGCTGGTGGCTGTAGGGGAGGGGAAGGGA
GGGCGGCGGCCAGGGGAGAGGCTTGTGGGCCGGCTTGCAGGGGAAGGGAGGGATGGAGAAGATA
GAGGAACATATCTGTATACCATGTGAGAAACTCCGACCTTAACTCAGGGTTGGGACTTGTATTA
ATAAACTAAGTGATGTTGGGCCTGGTCCATTGCACAGGGTATGAAGGTAATTATAGGAGGCTAA
CCCCAAAACCTAAACGAGGTTCTAACAGTGAATAAGATGTTATCTTAGGAAACTTTCAACAAGG
TAGTGAGCAATTCCCACTGCTGCTAGAAATACAAATGCTCTATGATCACTCAAGATTTTCAAAC
CTTGTCCCACTGCTTATTGCTATTTTCTGGTCTGTTGTGCTTAATAAATTTTTATTGTGTTCTG
CATACCCATGTTTTCGTCACAATAACAGTTTGATTTGGTCTTCTGTAATCATTAGCAGTCCATA
CCAGCACAATTGGTTGACGGTAACCACCCGGCTACCGCCATACTGGTTCTATATGCCCTCAACT
CACTGCCATATAGTATATACCAACCATTTCATCCTTATTTTTGCAAAAGCGTTGCTGAGTAGAA
TGCAACAAGCTGAGACAATTTTTTAGGTGGACAACTCAAAATTTCATTAAAGTCCTCTTCATGT
AAATTTTGAACTTTTAAAATCAGAAAAAGATAATGTAGCTTGGATTACTGTTTACTCTCAAACT
TATGTTGCAAGTAGGCTGATGCATATATTGAACTTCAAATAAATGTGCGACTGTTTATTTGCTG
TTATCTAGCCACACATAATACATTTTTTATTGATATTGCCTTGCCTTAACATCTTGCTCTTTAT
TTTGCCGTCCTGTTATATAAATAGGAAATATACTGCATTAAATTGCCTGGGAACCCCAAGCTTG
GTGAAGGCAAACCTGAGAACCAAAACCATGCCATAATCTTCACTCGAGGAGATGCAGTTCAGAC
GATCGATATGAATCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.012139734
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b