Detail information of AT2G05070_circ_g.4


General Information
CircRNA Name AT2G05070_circ_g.4
ID in PlantcircBase ath_circ_012830
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1799660-1799809  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method circRNA_finder, find_circ
Parent gene AT2G05070
Parent gene annotation Chlorophyll a-b binding protein 2.2, chloroplastic
Parent gene strand -
Alternative splicing 2_circ_ag.3 AT2G05070_circ_g.1 AT2G05070_circ_g.2 2_circ_ag.3 AT2G05070_circ_g.5 2_circ_ag.6 2_circ_ag.7 2_circ_ag.8 2_circ_ag.9 2_circ_ag.10
Support reads 6
Tissues whole_plant
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered AT2G05070.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCACAACTTGAACAGCCCAGATGGCTAAGATGCTTTGCGCGTGGATCAAGTTAGGGTTTCCGAG
GTAATCAAGACctccgggataaagcgggtcaagtccttctccgagtggtccacctccgattctg
tagccttcaatgaaccccatga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 150
Transcript exons: 1799660-1799809
CTCCGGGATAAAGCGGGTCAAGTCCTTCTCCGAGTGGTCCACCTCCGATTCTGTAGCCTTCAAT
GAACCCCATGAGCACAACTTGAACAGCCCAGATGGCTAAGATGCTTTGCGCGTGGATCAAGTTA
GGGTTTCCGAGGTAATCAAGAC

Genomic sequence CTCCGGGATAAAGCGGGTCAAGTCCTTCTCCGAGTGGTCCACCTCCGATTCTGTAGCCTTCAAT
GAACCCCATGAGCACAACTTGAACAGCCCAGATGGCTAAGATGCTTTGCGCGTGGATCAAGTTA
GGGTTTCCGAGGTAATCAAGAC
Conservation Information
Conserved circRNAs NA
PMCS 0.245077057
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017