Detail information of AT2G05070_circ_g.1


General Information
CircRNA Name AT2G05070_circ_g.1
ID in PlantcircBase ath_circ_012827
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1799487-1799701  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method circRNA_finder, find_circ
Parent gene AT2G05070
Parent gene annotation Chlorophyll a-b binding protein 2.2, chloroplastic
Parent gene strand -
Alternative splicing 2_circ_ag.3 AT2G05070_circ_g.2 2_circ_ag.3 AT2G05070_circ_g.4 AT2G05070_circ_g.5 2_circ_ag.6 2_circ_ag.7 2_circ_ag.8 2_circ_ag.9 2_circ_ag.10
Support reads 2
Tissues whole_plant
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered AT2G05070.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCTTCAGCTCAGAGAAAGCCTCTGGATCCTCAGCCAAGTTCAATGGGTCGAACGCACCTCCGG
GATAAAGCGGGTCAAGTCCTTCTCCGAGTGGTCCACaggatcagccaaatgatcaaataagttc
tcaatgggacctttaccagtaacaatggcttggacaaagaatccaaacatagagaacatggcaa
gacgaccg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGGATCAGCCAAATGATCAAATAAGTTCTCAATGGGACCTTTACCAGTAACAATGGCTTGGACA
AAGAATCCAAACATAGAGAACATGGCAAGACGACCGTTCTTGAGCTCCTTCACCTTCAGCTCAG
AGAAAGCCTCTGGATCCTCAGCCAAGTTCAATGGGTCGAACGCACCTCCGGGATAAAGCGGGTC
AAGTCCTTCTCCGAGTGGTCCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.684245914
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017