Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G09230_circ_g.3 |
ID in PlantcircBase | ath_circ_001615 |
Alias | At_ciR2064 |
Organism | Arabidpsis thaliana |
Position | chr1: 2980605-2981012 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | AT1G09230 |
Parent gene annotation |
U11/U12 small nuclear ribonucleoprotein 65 kDa protein |
Parent gene strand | - |
Alternative splicing | AT1G09230_circ_g.1 AT1G09230_circ_g.2 |
Support reads | 4 |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G09230.3:2 AT1G09230.1:2 AT1G09230.2:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.31065292 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
2980950-2980607(-) |
Potential amino acid sequence |
MDKDVPHETVGVKPSSLTPKEIPRIRKNKHVMQIKITSKVTQDEYKEESENEDPADEPKEKDSN LKPFASLEELEKGRLPPQDILSLPMFKDIGTSKSGRKRARHGFLVGLGMDKDVPHETVGVKPSS LTPKEIPRIRKNKHVMQIKITSKVTQDEYKEESENEDPADEPKEKDSNLKPFASLEELEKGRLP PQDILSLPMFKDIGTSKSGRKRARHGFLVGLGMDKDVPHETVGVKPSSLTPKEIPRIRKNKHVM QIKITSKVTQDEYKEESENEDPADEPKEKDSNLKPFASLEELEKGRLPPQDILSLPMFKDIGTS KSGRKRARHGFLVGLGMDKDVPHETVGVKPSSLTPKEIPRIRKNKHVMQIKITSKVTQDEYKEE SENEDPADEPKEKDSNLKPFASLEELEKGRLPPQDILSLPMFK(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015 |