Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | AT1G09230_circ_g.2 |
ID in PlantcircBase | ath_circ_001614 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 2980022-2980778 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | AT1G09230 |
Parent gene annotation |
U11/U12 small nuclear ribonucleoprotein 65 kDa protein |
Parent gene strand | - |
Alternative splicing | AT1G09230_circ_g.1 AT1G09230_circ_g.3 |
Support reads | 5 |
Tissues | seedlings |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G09230.3:3 AT1G09230.2:3 AT1G09230.1:3 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.129172413 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
2980614-2980024(-) |
Potential amino acid sequence |
MFKNYTAGNPSVVLYIKNLAKDVVIDDFYYIFGSQFESSEVAKSSLGVRLMQIKITSKVTQDEY KEESENEDPADEPKEKDSNLKPFASLEELEKGRLPPQDILSLPMFKNYTAGNPSVVLYIKNLAK DVVIDDFYYIFGSQFESSEVAKSSLGVRLMQIKITSKVTQDEYKEESENEDPADEPKEKDSNLK PFASLEELEKGRLPPQDILSLPMFKNYTAGNPSVVLYIKNLAKDVVIDDFYYIFGSQFESSEVA KSSLGVRLMQIKITSKVTQDEYKEESENEDPADEPKEKDSNLKPFASLEELEKGRLPPQDILSL PMFKNYTAGNPSVVLYIKNLAKDVVIDDFYYIFGSQFESSEVAKSSLGVRLMQ(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to heat stress |
Other Information | |
---|---|
References | Pan et al., 2017 |