Detail information of BGIOSGA014346_circ_ag.7


General Information
CircRNA Name BGIOSGA014346_circ_ag.7
ID in PlantcircBase osi_circ_014821
Alias Chr04:31979286_31989678(MH63RS2), Chr04:31979286_31989678(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 30264772-30269374  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRCexplorer2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA014348_circ_ag.1 BGIOSGA014348_circ_ag.2 BGIOSGA014346_circ_g.1 BGIOSGA014346_circ_ag.1 BGIOSGA014346_circ_ag.2 BGIOSGA014346_circ_g.3 BGIOSGA014346_circ_ag.4 BGIOSGA014346_circ_ag.5 BGIOSGA014346_circ_ag.6 BGIOSGA014346_circ_ag.7 BGIOSGA014346_circ_ag.8 BGIOSGA014346_circ_ag.9 BGIOSGA014346_circ_ag.10 BGIOSGA014346_circ_ag.11 BGIOSGA014346_circ_ag.12 BGIOSGA014346_circ_ag.13 BGIOSGA014346_circ_ag.14 BGIOSGA014346_circ_ag.15 BGIOSGA014346_circ_ag.16 BGIOSGA014346_circ_ag.17 BGIOSGA014346_circ_igg.1 BGIOSGA014346_circ_ag.2 BGIOSGA014346_circ_ag.3 BGIOSGA014346_circ_ag.4 BGIOSGA014346_circ_ag.5 BGIOSGA014346_circ_ag.6 BGIOSGA014346_circ_ag.8 BGIOSGA014346_circ_ag.9 BGIOSGA014346_circ_ag.10 BGIOSGA014346_circ_ag.11 BGIOSGA014346_circ_ag.12 BGIOSGA014346_circ_ag.13 BGIOSGA014346_circ_ag.14 BGIOSGA014346_circ_ag.15 BGIOSGA014346_circ_ag.16 BGIOSGA014346_circ_ag.17 BGIOSGA014346_circ_ag.18 BGIOSGA014346_circ_ag.19 BGIOSGA014346_circ_ag.20 BGIOSGA014346_circ_ag.21 BGIOSGA014346_circ_ag.22 BGIOSGA014346_circ_ag.23 BGIOSGA014346_circ_ag.24 BGIOSGA014346_circ_ag.25 BGIOSGA014346_circ_ag.26 BGIOSGA014346_circ_ag.27 BGIOSGA014346_circ_igg.28 BGIOSGA014346_circ_ag.29 BGIOSGA014346_circ_ag.30 BGIOSGA014345_circ_g.1 BGIOSGA014345_circ_igg.1 BGIOSGA014345_circ_g.2 BGIOSGA014345_circ_igg.3 BGIOSGA014345_circ_g.4 BGIOSGA014345_circ_g.5 BGIOSGA014345_circ_igg.6 BGIOSGA014345_circ_g.7 BGIOSGA014345_circ_g.8 BGIOSGA014345_circ_igg.9 BGIOSGA014345_circ_g.10 BGIOSGA014345_circ_g.11 BGIOSGA014345_circ_igg.12 BGIOSGA014345_circ_igg.13 BGIOSGA014345_circ_igg.14 BGIOSGA014345_circ_g.15
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TT
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTCCTTCACCAAGGCGGTTGCTGGAACTAAAATTTTCAGTTGCAGACCTTAGTTCACTATAAC
TGAATACATTAGGTCTTCCGACAATACTGTATAGCTtcgtttcattcagaaatcagaatcgaag
caagcaagcacgcgtgctcaccttcagtcggatcagtcctcgttgctacccgctgagcctgaac
agccgcgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TCGTTTCATTCAGAAATCAGAATCGAAGCAAGCAAGCACGCGTGCTCACCTTCAGTCGGATCAG
TCCTCGTTGCTACCCGCTGAGCCTGAACAGCCGCGGCTGCAAGAAGCAGCAGGAGCACACCGCC
ATGGAGGAGGAGATGGCTCACCCTCATCGTCTCCCTCCTTGACCTTGAGCCTTCTGCTCGCCTC
CGTTTCTGGGAGAAGCGAAGCGATGAGCCGAGCCGAGCCGGTGACGAACTGACGAAAGGTGAGA
TGGATGATATCCTCGGGCGTAGAAAGGGACGCACGCTGCGACGAACACTGGAGACAATATATAC
GCACGCAGCACACAAAATACACAGTCAGCTATTCTGAATTGACCAAAATTATTGTACTGCTCAT
CAAAACGGCGACGCTGCTGTCAACTGTACCAAAAAAAAACGAGATTCTAAAGAAACAGCAGCGA
GCGAGCAAGCAAGCAAGAAGCCCCAACTTGTCCCAGATGCAACGCACGGCCAACGAGAAGTGGC
TAAACTAAACATGTGCGCGGTTGTTGCAGTATTAAACTAATGATTAATCCGTATTTTTGGTTTT
GTTTGGAACGGGGATGAGGGGTCAGGGGTCTCTCTGTCCACATGAGGATGCGGGTTGCGGCCGT
TGAAGAGGAGGGGAAACTCGGGAAAGAGTCAAGCGTTGGCAAGAGATAAGCTCGTGCGCGGGCG
TGTGCGTGTTCATGGTCATGGATGGGGGTAAGTAGCTTTTGACACTCGATTGCTGAATGGGAAA
TGGTCATGTGTGGTAGCTTGCGGAGTTGTCGTGGACAGGTTCTGGAGAAAGAAAATCCCTCGCT
ATTACGAATTAATCTTGAAATTTGCTCCGCTAGCTGGTCTTATCTAATCCCTCCGTCCCAAAAT
ATACTCACTCATTCCCTAAATGTTTGACGCTGTTGACTTTTTTAAATATGTTTAACCGTTCATC
TTGTTTAAAAACTTTTGTAAAATGTGTAAAACTATATGTATGCATAGAAGCATATTTAACAATG
AATCAAATGATAGGAAAAGAATTAATAATTACTTAAAATTTTTTAAATAAAATAAACGGTCAAA
CATTTTTAAAAAAACCAATAGCATTAAATATTTTGGGATGGAGGAAGTAAATAATAGCGGACCT
TCCGTTGTGGCAAGATGTGGCAGCTGCCATCCCTAACTACCAGCGGTAACTATCAACTGAATAA
CAACACTATTGACTGTTTCATGGGTTGTTACTGTGATGATGGGAGGCAGGAAGCACTAATCTTG
TGGTACTAGTACAAGCTAATACTGGTGTGGTCGACCAAGTGATGATGCAACTGCATCGGCTGGA
AACAATTGAGCAAAAGTACAATTACTAAAAAAAATTAGACGCTAACTACAAATAATTGAAGAAT
AATTTGGGATGGGAACATTTGGATGGCTCTAGGGGCTCACATTCCAGGAATCAAGCTTCACCTA
TATTGAAAACAGTAAATTATTTACTTATAATTTTATTGGATGTGCACACTAATTTTTTTTATCA
TATACATTATATACTAATGTTTTGGTACGTTCACGTCTTTTTTTTTAAAAAAAATGTCTCCACA
AGTATTTAGAAAAAGATGAAGTATATCGGTGTTAAGTATATTTAGAAAGTCCGCCATCGCTATA
ATTTTGTGCTAGGTCCGCCATTGAATATAAATGATTTTAGATTAATGCAACTAACAATATGATG
GGATGGTTCTTATATTTTATGATGAAGGAATATTGATTTTGATGACTATTGATTACAACATTAC
TCGTTAGGAATTATGTGTTGTTAAATTCCGCGGTATCAGATGATTATTTTGGTAGGCTATACAG
TACGCGTCACACTCGTATCTGACATCTCAATGAGAACTAAGGGTCAGGTTGCTAATATGCTTAG
GTAGTTTAGGCTAGAGCGACTGGGTAGAGCATGTGCATATCAAAAACCGTATATAGCCTTTTTT
TTATTTAACTCCATATCCTATAGTGGTTCTGTTAAATTTAGGAGAGAGAACATTATGTCTACTT
TTGGGCACATACTCATTTCGTCCTAAAATTTAAGTGATTTTAAATGGATAGGATATATCGTAGT
AGTACTACGAATATAGATATGTCTTATATTTTGAGACGGGGGAGTAGAATACATTAACCATACT
TGTCAACCTGAAGGGAGTACTTAATATGAATGCTTTTTTTAAACCCGCATGCACTCAGTTATTT
GCTTGACCACTCCTATTTTTTTTTAAGTGACCGTATCCCGCTGGTTCATAGTACTAGGGATTTT
TTTTATTAGTTATAAGTTACTTCCTCCGTTTCATAGTGCAAGTCTTTCTAGCATTACTCATATT
TATATAGATGTTAATAAATCTAGACATATATGTGTCTAGTATGTCTAGATTTATTAACATCTAT
ATAAATGTGTGTCTAGATTTATTAACATTTATATGAATATGAACAATGCTAGAAAGTCTTACAT
TATGAAACGGAGGGAGTATAAGTTATAACAACTCTTTTGGGGTGTGGCCAAATCACCCAAAATT
TTAAAACATTCGAACTTTTAACATTTTAAAAATTCCCATCAAACTTGAAGGCATTTACTTTCTT
TTTTAAAAAAAAAATTGTGACAGAGATCTCCATGAAACTGGCAAGCTTGCTAATAAGCTCAAAA
GGGAAACAAGAAAAGGACAGCAACCTGCACTGCAAAACTGACAGTCTCGCACACCATTTGCCCT
CTGCAACGAGTATTCACAAGACGAGATTAGATTATCATCTGCCACTTCATGACAAGCCAGACCC
GCGCGAAAATCACCGGCCTTCCGGGATGACGGAGTTCAAGAACAACGACGAGCCTTGCTGCTCC
GAGGCCGATCCCGGCGCCGAGCTCGACTGCCCGCTGACGGCGCTGTTGGCGAAGCTGGTGTTGC
CGCCCTTGATCTGCCACTCGGTGATGTAGCTCGGCTTTGTCAGCACATCGGGCACCTCGACATC
GCCGGCGAGCATCGACGCGACCCTCGACATTGGCGGCCGCTGGTGAGGTGAGCCCTGGGTGCAG
AGGAGGGCGACGCGGATGGCACGGAGCACCTCCTCCCGGTTGAATTCCTTGAGCTTTGGGTCTA
CGAGGCCCAGAGGGTTGTTGTTCTCGTACAGCTCCCAGGCCTGAATGTATTGAGATGGTAAGTA
TTCAGATGATCAGATCATAGGGGCATAACCAGTTTTTTTTTTTTTTGCATGTTTAGATAAAATC
GGATGATGGCACTTGTGTTTAGTGTTATCAATCTTTACTAGAAAATTTCAGAGTATATGCTGCC
AATAACACAAAGATCAGATTAGAATTTGTCCTTCCTTGGTGAGAATTCAAAAGTGAGCTACTAA
GTACTAAGCTTACCCATTCGAAAATATAAATTTTGTCTTCTTCAAGCGTATCATCATAGTTTGG
CCGTCCGGCTAAAGTCTCCAATAAGACCACGCCAAATGCAAAGACGTCAACTTTCTCGGTCATA
TGGCCTCTCATGGCGTACTCAGGTGCAAGATAACCGCTGGACAAAGGAGAGCCAAAAAAGCCAC
CGCCAACATAAGTATGAAAAATTGTAAACATAAAGGTGGGAAAGAAGGAATGTACTTACAATGT
GCCAGCAACCTTCGTGCTGACATGCGTCTTCTTGTCATCATAAAGTTTGGCTAGCCCGAAATCA
GAGATCTTAGGATTGAGATTGGCGTCAATTAAGACATTGCTGGCCTTGATGTCCCTGTGCACAA
CACGGATGCTGGACTCTTCATGAAGATAAGCCAGACCTCTTGCAATGCCTAGGCATATCTCAAA
ACGTGCTGGCCAATCTATGGTCAATTTCTCAGTTCCTGCAAATGAAGGGTTAAGCTTTTAGGTT
GTAGACTATGATAAACCTGAATTATGAAAATATCAGTTGCATCAAACTGAAATTGCTCGTACCA
AACAATGCTTTATCAAGGCTTCCGTTTTCCATGTACTCATAAACCAGCAGTGGATTATTGCCTT
CAAGGCAGCAACCATACAACTTCACGAGATTACGATGTTGCACTCGGGATATAGTTTCTATCTC
CGTCGCAAATTGTTTTTTCCCTTGATGAGATGTTTGAGATAGCTGCTTCACTGCCACTACCCTT
CCATCAGTTAACTTGCCCTGCAAGGTGGCATTCACCAAACAGCAAGTTCAAGGGATCGCAATGC
CAAAGCCGAATATATTTATTTGGTAATGGATACATTGGAATGTTTTTTTTTCTGATTTATTGAT
ATGCATCATTTACGTGCAAAAAATAGAAAGCACAAAGAATCTAACCAATTATCCATAAAAGAAA
TGAATTCATACAATCATATGTATTTTTTAGCTGTACGCTACTTGTCTAGATGTTAATAAGTTAA
TTCATAGGTAAAATTCCATAACAAGTTCGAAACCTTGAATATATATATGTACTTACAGATGAAC
TAACCTTATAAACTGCCCCATATCCTCCTTCACCAAGGCGGTTGCTGGAACTAAAATTTTCAGT
TGCAGACCTTAGTTCACTATAACTGAATACATTAGGTCTTCCGACAATACTGTATAGCT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021