Detail information of BGIOSGA014346_circ_g.1


General Information
CircRNA Name BGIOSGA014346_circ_g.1
ID in PlantcircBase osi_circ_014797
Alias Chr04:31978080_31988252(MH63RS2), Chr04:31978080_31988252(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 30258100-30262265  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRCexplorer2, CIRCexplorer2
Parent gene BGIOSGA014346
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014348_circ_ag.1 BGIOSGA014348_circ_ag.2 BGIOSGA014346_circ_ag.1 BGIOSGA014346_circ_ag.2 BGIOSGA014346_circ_g.3 BGIOSGA014346_circ_ag.4 BGIOSGA014346_circ_ag.5 BGIOSGA014346_circ_ag.6 BGIOSGA014346_circ_ag.7 BGIOSGA014346_circ_ag.8 BGIOSGA014346_circ_ag.9 BGIOSGA014346_circ_ag.10 BGIOSGA014346_circ_ag.11 BGIOSGA014346_circ_ag.12 BGIOSGA014346_circ_ag.13 BGIOSGA014346_circ_ag.14 BGIOSGA014346_circ_ag.15 BGIOSGA014346_circ_ag.16 BGIOSGA014346_circ_ag.17 BGIOSGA014346_circ_igg.1 BGIOSGA014346_circ_ag.2 BGIOSGA014346_circ_ag.3 BGIOSGA014346_circ_ag.4 BGIOSGA014346_circ_ag.5 BGIOSGA014346_circ_ag.6 BGIOSGA014346_circ_ag.7 BGIOSGA014346_circ_ag.8 BGIOSGA014346_circ_ag.9 BGIOSGA014346_circ_ag.10 BGIOSGA014346_circ_ag.11 BGIOSGA014346_circ_ag.12 BGIOSGA014346_circ_ag.13 BGIOSGA014346_circ_ag.14 BGIOSGA014346_circ_ag.15 BGIOSGA014346_circ_ag.16 BGIOSGA014346_circ_ag.17 BGIOSGA014346_circ_ag.18 BGIOSGA014346_circ_ag.19 BGIOSGA014346_circ_ag.20 BGIOSGA014346_circ_ag.21 BGIOSGA014346_circ_ag.22 BGIOSGA014346_circ_ag.23 BGIOSGA014346_circ_ag.24 BGIOSGA014346_circ_ag.25 BGIOSGA014346_circ_ag.26 BGIOSGA014346_circ_ag.27 BGIOSGA014346_circ_igg.28 BGIOSGA014346_circ_ag.29 BGIOSGA014346_circ_ag.30 BGIOSGA014345_circ_g.1 BGIOSGA014345_circ_igg.1 BGIOSGA014345_circ_g.2 BGIOSGA014345_circ_igg.3 BGIOSGA014345_circ_g.4 BGIOSGA014345_circ_g.5 BGIOSGA014345_circ_igg.6 BGIOSGA014345_circ_g.7 BGIOSGA014345_circ_g.8 BGIOSGA014345_circ_igg.9 BGIOSGA014345_circ_g.10 BGIOSGA014345_circ_g.11 BGIOSGA014345_circ_igg.12 BGIOSGA014345_circ_igg.13 BGIOSGA014345_circ_igg.14 BGIOSGA014345_circ_g.15
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   AA-TA
Number of exons covered BGIOSGA014346-TA:12
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GACCCCTATAAGGTGATTCAGCACAGTCAATTAAAAAGATACTCTAGAAACGATAAAAACAAAC
TATCTTTCACAAATCACATGAGCCAAGTAGTTTTAGcccattcgaaaatgtaaatcttatcttc
ttcaagtgtatcatcgtagttcggccgtccagctaaagtctccaataagaccacgccaaatgca
aagacgtc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCCATTCGAAAATGTAAATCTTATCTTCTTCAAGTGTATCATCGTAGTTCGGCCGTCCAGCTAA
AGTCTCCAATAAGACCACGCCAAATGCAAAGACGTCAACTTTCTCAGTCATATGACCTCTCATG
GCGTACTCAGGTGCAAGATAACCGCTGGACAAAGGATACCCCAAAATACCATTAACATAAATAT
GAAAAATTGTAAACATAAAGGTGGGACAGATGGAATGTACTTACAATGTACCAGCAACTTTCGT
GCTGACATGCGTCTTCTTGTCATCATAAAGTTTGGCTAGCCCGAAATCCGAGATCTTAGGATTG
AGATTGGCGTCAAGTAAGACATTGCTGGCCTTGATGTCCCTGTGCACGACACGGATGCTGGACT
CTTCATGAAGATAAGCCAGACCTCTTGCAATGCCTAAGCATATGTCAAAACGTGCAGGCCAATC
TATGTTTAATTTCTCAGTTCCTGCAAATGGAGGGTTTAGATTTTAGGTTACAGACTATGATAAA
CCTAAATTATAAAATCCCAATTGCATCAATCTGAAATAGCTTGTACCAAAGAGTGCTTTATCAA
GGCTTCCATTTTCCATGTACTCATAAACCAGCAGTGGATTATTGCCTTCAAGGCAGCAACCATA
TAACTTCACGAGATTACGGTGTTGCACTCGGGATATAGTTTCTATTTCTGTTGCAAATTGCTTT
TTTCCTTGATGAGATGTTTGAGATAGTTGCTTCACTGCCACTACCCTTCCATCATTTAACTTAC
CCTGCAAAGTGGAATTCACCAAAATGCAAGATTCAAGTATTGCAATGCCGGACATCTTCTGTAA
TGGATATATTGGCATATTTTTTTCTGGTTTATTCATATGCATCATTCGTGCAAAAGCTAGAAAG
CACAAAGAGTGTAGCCAATTAATTATCCATAACGAACAACAAATTATACAATCACTACTTATCT
AGATGTTAACAAGTTAATTCACAGCAAAAGGTTACAGATGAACTAACCTTATAAACTGCCCCAT
ATCCTCCTTCACCAAGACGGTTGTTGGAACTAAAATTTTCAGTTGCAGACCTTAGTTCACTATA
ACTGAATACATTAGGTCTTCCAACAATACTGTATAGCTCTGCGAACATAAAAAGGAACATCAAT
TTATTAACTTCTTGTTTGTCTGGTCAAGGATACAATGTGAGCATAGTGTGCCATGTACCTTGTT
GCTCCAGTGACAGTTTTCTCCTTTTCTGTCTCCACATAAAAATTGCAACAAGTGCTACCAGACC
TAAAACTGCCACACCAACCACAACGCCAACAATTACACGTGTTTTACTAGTACTCTTGTTTTGT
TCTGCCACGACACCCACCGTAGGGGTGAAATCTGACAAGAAGTCCACTTGTTAGAAAAAAAATG
TGATCTTACAGCAGAATGCTACAGCTGACCCTAGAAAATACATCGTTTCCATCTTGGGACCATG
ATTTGTAGTTAAGGTGAGTACCTGCAGGGGTTACGCTCAAAGCCGAGATAGTGGGCCCATAGTA
GCCTTGACCAGGAATGCAGCAAGTGCCCTTGCCAGCCCAGAAGAGATGAATCTCAAGGAAGTTT
TTGGTCACAGGAACTTTATATGACTTCTTAACAACAGTGTAAGATTTATCGCCTGCTGCCTTCC
TGATGTCAAAGTTCTTCTCCTGACGTTCACCCTGCAAAAAAAACAAGACAAGAAAATCTTGAAT
TGACTGTAAGCTAAACAAAAAAAAATAGTTTATAAGCTAGACAAGAACCAACCTGGAGATATAT
ATCAAAAACCCTTCTCCCTAGGCTCTTATAAGACTGCGTGTCTTCGATCCCAAACTCTGCAAAT
TGAAGAGTGACTGTATAGTTTCCATTCTCAAGTCCAATACCATAGTATCTTAAAGATGATGGAG
ACATCCTTGAAGTCTGGAACAGTTCTGAATCTAGGGTGTTCTGAAACTGGCGCGAGCTGTAGAT
TATGTAACTTCCATTTGGTGCATCCATGAACTTTCCAACGTTGCTAACACCCCATGTTGGTTCT
CCTGTGACAGAATATGATGCAGCTCCAAGGCTAGCATCATCAGTTTGATACCTAAAATTATCTG
AGCCTGATATTAGTCTATTGCTACCACAGTCCACAGCAAAGGAGGAAGCTGCAAACAAATTAGA
TCAATTAGTATTAGTATTGACTAAGTAAATCTGCGGTTGCATATTTGGTGTTTATCAACTAAGC
ACATTCATGGTATTGCAAAGGGTGAAAGACTCACACTTTGGAGAACATGGTGTATTTCTTTGAA
GGCATGCAAGCCCTGAAGGTAAGACACTGCAGATGCAAAGCATAAAAAATTTGAATCCAATTAG
AAGCTGAGAGAACCTAATAATTATGCTTGAGTACTTGATGAGAAACTACAAATGTGGACGCACC
TGTTATTGGAGCTATCAATCACGAAATTGTTTGCCACCAAATTCCTAAGTAGAATGAGCAGAAC
TAAAATTAAAAGGCTTTCCACACTTCATATTTGCATAGCATATTTAGAGCTTGTTTGGTCTAGC
TTGAAAAAAAAAAGCTATAAAAGTATTCAATTTTGAGCTAAGTTGTAAGGTAAGTCTCATTTCC
ACAAAAAAATCTTAATTATAAGTGCCCTATAGATGATAGGTCCAAAAATTTAAGACATATAAAC
TAGATGCATCAAATACAGCTTTCATATTTACCAAGCACGCTAGCTCGTCACATGTGTACGCTAC
ACGCATAAATGCTGGCCTAACATAGGTCAGACATGCCCTTATATTTCAGGGAATGAAACGAGCC
CTTTCATTGGAGCTAATGGATAGATGTTTCAGAAGTTGGTACTTACAATTGTAAATTTTTCCCA
CTAGCCCATGGAGGAAAATTTCCTGAGAGCTGGTTGTAAGAAAAATCTCTGCAATCAGGGAGAT
GCCAGATCATCGTTAGAAATAAATTAAACAAATATTCATTATGTTATTCAAACAAACTTGGATC
ATATGAACATACAAAGTTGAAAGTGAAGGTCCTTTTGAGCTTGGAAGGCTTCCTGAAAGACTAT
TATTCCCAAGAAATCTGGTCAGGCAAAACTTGCAAACATTAGTAAGACACATAAATGGGTCTTT
GGCTCCAAGAAATGGGCTTTTGAAGTCAAGATAATCCATACAAGGAGTTCAGCAAATTCAGACC
CAACAGGGTGGTTGGTACTTGACCAGTGATATTGTTAAAACTCAAATCCCTGTAACAGTAAAAA
AAAGGGTGGCAAAGAGGTCATCAGACATTGTACGGTTCATAGAAATATATTTCACAAAACGCGC
TTGATTACAATTTATTGTAGAAATAAATTCCTTACAGTAAGTTTAAACTTGCAAACTTCGAAAA
GTCTATTGATGCAAGATTATCAGATATCTTACAGTTCCTCAAAATCCTGCAAAGACATATGTTA
TGCATTATAAGATCAATCAACTTGGTTTGAATTGCATTAATATTCTGAGCAGTAGTACGGCCGT
ATGGGTAATTAAGTGGATTAAAAGTTATGCATACAGGATGCTCAACGATGTCATGTTACCGATG
AATGCCAGTGAAGAAGAGCTTCCATTTTCAATATCACCGATTCGTCTGCACCATATAAAACAAT
TATTCGACTTTCCCCTCCTACATTCTTTATATTAAGAATACCATATTTATTGGTAGTGTTAGGC
ACTTACAAGCTTGATAGTTGGACAAGATTAGAAAGAGCAGAAGGAATTGGACCTTGAAAAGAAT
TTCCTTGAAACCGCCTACAGATCATAGCTGTAACTAGTCATTCAAATCGTCTTTTTTACTGAAA
CATCAAACTAGAAATGATAGCAGGAAGAACTCTTTGATTAAAAAAAGGAAACTAAACTAATGAA
GCTAAAGTACAGCTTCTTTCATGGTGAATACATAAATATTGTAAAATATATTCAAAGCTGAATA
ATGCTTTTCAAGATCGGAAGCCATCTCATCATGAATAGTGACAGAAGAAAGATGCATCATTTAC
CAATGCTCAACAATCATCCAAACTTAAATAAAGAGACCCCTATAAGGTGATTCAGCACAGTCAA
TTAAAAAGATACTCTAGAAACGATAAAAACAAACTATCTTTCACAAATCACATGAGCCAAGTAG
TTTTAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021