Detail information of BGIOSGA015834_circ_g.1


General Information
CircRNA Name BGIOSGA015834_circ_g.1
ID in PlantcircBase osi_circ_014472
Alias Chr04:2330962_2331605(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 2272479-2273122  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA015834
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA015834-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCATTGCTCGCTCTCCAACTGCGCCGACGGCCTCATCGACGCCATCATGGGTTCCACTGCAATC
ACAGTGTCCAACAACTACTTCACCCACCACAATGAGggtcgatcaggaacagcacggcgaggag
gaagctgggctacctgtcgtgcggcaccggcaatccgatcgacgactgctggaggtgcgacccg
gactggca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTCGATCAGGAACAGCACGGCGAGGAGGAAGCTGGGCTACCTGTCGTGCGGCACCGGCAATCC
GATCGACGACTGCTGGAGGTGCGACCCGGACTGGCACAAGAATCGCCAGCGGCTCGCCGACTGC
GGCATCGGCTTCGGCCGCAACGCCATCGGCGGCCGCGACGGCAAGATCTACGTGGTCACCGATC
CCAGCGACGACGACGCGGTGAACCCCAAGAAGGGCACGCTCCGGTACGCCGTCATCCGCGACGA
GCCGCTGTGGATCGTCTTCAAGCGCGACATGGTGATCACGCTCAAGCAGGAGCTGATCATGAAC
AGCTTCAAGACCATCGACGGCCGTGGCGCCAACGTGCACATCGCCAATGGCGCCTGCATCACCA
TCCAGTACGTCACCAACGTCATCATCCATGGCCTGCACATCCATGACTGCAGGCCCACCGGCAA
TGCCATGGTCCGGAGCTCGCCCAGCCACTACGGGTGGCGCACCATGGCCGACGGCGACGCCGTC
TCCATCTTCGGCGCCAGCCACATCTGGGTTGACCATTGCTCGCTCTCCAACTGCGCCGACGGCC
TCATCGACGCCATCATGGGTTCCACTGCAATCACAGTGTCCAACAACTACTTCACCCACCACAA
TGAG
Conservation Information
Conserved circRNAs osa_circ_022974 osa_circ_022973
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021