Detail information of EPlOSAG00000021758_circ_ig.5


General Information
CircRNA Name EPlOSAG00000021758_circ_ig.5
ID in PlantcircBase osa_circ_022974
Alias NA
Organism Oryza sativa
Position chr4: 2483499-2484141  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing EPlOSAG00000021758_circ_ig.4
Support reads 4
Tissues seed
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCATTGCTCGCTCTCCAACTGCGCCGACGGCCTCATCGACGCCATCATGGGTTCCACTGCAATC
ACAGTGTCCAACAACTACTTCACCCACCACAATGAGgtcgatcaggaacagcacggcgaggagg
aagctgggctacctgtcgtgcggcaccggcaatccgatcgacgactgctggaggtgcgacccgg
actggcac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCGATCAGGAACAGCACGGCGAGGAGGAAGCTGGGCTACCTGTCGTGCGGCACCGGCAATCCG
ATCGACGACTGCTGGAGGTGCGACCCGGACTGGCACAAGAATCGCCAGCGGCTCGCCGACTGCG
GCATCGGCTTCGGCCGCAACGCCATCGGCGGCCGCGACGGCAAGATCTACGTGGTCACCGACCC
CAGCGACGACGACGCGGTGAACCCCAAGAAGGGCACGCTCCGGTACGCCGTCATCCGCGACGAG
CCGCTGTGGATCGTCTTCAAGCGCGACATGGTGATCACGCTCAAGCAGGAGCTGATCATGAACA
GCTTCAAGACCATCGACGGCCGTGGCGCCAACGTGCACATCGCCAATGGCGCCTGCATCACCAT
CCAGTACGTCACCAACGTCATCATCCATGGCCTGCACATCCATGACTGCAGGCCCACCGGCAAT
GCCATGGTCCGGAGCTCGCCCAGCCACTACGGGTGGCGCACCATGGCCGACGGCGACGCCGTCT
CCATCTTCGGCGCCAGCCACATCTGGGTTGACCATTGCTCGCTCTCCAACTGCGCCGACGGCCT
CATCGACGCCATCATGGGTTCCACTGCAATCACAGTGTCCAACAACTACTTCACCCACCACAAT
GAG
Conservation Information
Conserved circRNAs osi_circ_014472
PMCS 0.6261764
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017