Detail information of 2_circ_ag.12


General Information
CircRNA Name 2_circ_ag.12
ID in PlantcircBase ath_circ_015500
Alias NA
Organism Arabidpsis thaliana
Position chr2: 12547448-12552435  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT2G29140_circ_g.1 AT2G29140_circ_g.2 AT2G29140_circ_g.3 AT2G29140_circ_g.4 AT2G29140_circ_g.5 2_circ_ag.6 AT2G29140_circ_g.7 AT2G29140_circ_g.8 AT2G29140_circ_g.9 AT2G29180_circ_g.1 AT2G29180_circ_g.2 AT2G29190_circ_g.1 AT2G29190_circ_g.2 2_circ_ag.3 2_circ_ag.4 AT2G29190_circ_g.5 2_circ_ag.6 AT2G29190_circ_g.7 2_circ_ag.8 AT2G29190_circ_g.9 2_circ_ag.10 2_circ_ag.11 2_circ_ag.13 AT2G29200_circ_g.1
Support reads 9
Tissues root, whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGACAGATTATTATTAGAGTCAACATTTTCATCAAAGGTATTACGACTTGCAGGACGTGAGGG
CTGTTGTGCGACAGGATGTCCATGCCCCATATCAGCctgaaagatatcagcaaaactcttctgc
ttgcctccaatccccaaacccggcaaaccgatcaatccattagcatcccattcagaagaagaag
cactagtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGAAAGATATCAGCAAAACTCTTCTGCTTGCCTCCAATCCCCAAACCCGGCAAACCGATCAAT
CCATTAGCATCCCATTCAGAAGAAGAAGCACTAGTTTTCTCAACCTCAAACTCATGCTGCTTCC
TCTGATCAAAACCAGGTGGCATAGAGAATAAAGATTGACTATCATTAACTTTCCTCCTATCCCC
AACACCACCTAAAACATTACTACTCCCTTTAAGCCTCTGAGCAACCCTCAAATCCTCCCTAGAC
ATCAAAGGCGGTGGCAACCTCGGATTCAACTTCATATTAGCATAGTAATAAGACAAGTAAGCCG
GATCTTTCCTAAACTCCTCATCATCGCCACCAAACCCATTACCCTTGTTGCCTCCACCAAACTC
CAAAAAAGGAGCCCCACCTCCGCCGCTAAAAAGCCCTCCAGCAGCACTAACAGAACCATCAACA
GTCGGTGGAGCAGAGCCACTCCTATACAAATTAAGCTCTCTCTCAAGCTCATCAGCTTCTACTT
GCCTTCTCTGCTGCTCACCAAGTAATACTCCAATCTCTTTCTCATAATCATCCCCAAAAGATGA
ATCTTCGTTCCCTCTATGCATCGGTCTTCTCCCCAGTTCCGGTATCATTATCACCTAAACAACA
AAAACCCTATAACCACTTTATCAGATTGTACTCATATACACTAAACTCTTCAGGAAAAGAAACA
TAAAAATCATAAAGATCAAAACTTTATACCTCAATATATACAATCCTCGAAATACTCTGTTGTA
GAACTAAACCCAAAGATCAAAACTTCATTAAGCGATACTCAAATCCATCCTGAGATTGTATCGA
AGCTTTGATTTTTCATGTCACTGTTTGTTTTAAAGTAAAGACTTTTAGACAGAGAGATAGAAAA
ATGGGTTTTATAGTGTTGACGAAAAATCCGATACTGAGCCTATCGACAGAAGAGTTGAAGAAGA
AGAAGATCGAGAGAGAAAGAGAGTGAGAGAGATAGAAATGGAAGGAAGAATTGAGATTAATAAT
TGTTGGTATTGTTTTGCATAAGGAAACCCTAACATTTCGGAGTCCCTTAAATACAGAGACACAT
GACACATTCTTGTTAAACGACAACACTTAAGGCAATGTAAGAAAATCACACTTTGTCTCTTTCT
CCCTTGAGAACCTTCTCTTCCCACAAGAGTCTTCTTGCCACTTAAGCTTGTTCAGCGACTTAAA
GAGAAGTTTTTCCTGCTTCATCTTTTCATCTTCTTCTTCTGAAGCAATTGTGTCAAGTGGTGGT
CAAGATGGTGTTGCTTTGATTATACAAGTGCTTCTCTACTCTTCTCATCTCTGTGTACATTGGA
GTGACTGAGTTTCTTGGGAAGAGTAAAGACTAAAGAGAGAGGTTTGAGAAAGATAAAGCATCGA
AGAAGTCTAAGAAAGGTGGCCAAAAGAAGGCAATGTGAGCCAAAACTGGACCAAGAGGTTCATA
AGATTAAAAATTGATTGTGAATGATTCTATTCCACTGTGTGCAGAGAGACCAAGATTGATTTTG
TTTGTAAGGTTGCTATGTGATTGTTACATCTATGATACGTTACCAATCAACTGGATCGATATAA
ACAAGAAGATTGCAAACTAGCCGAAACGAAAAAGTTCCTCGTGAAATAGGAAACAAGAGTTTGA
TGAAACAAATTACATAGATGGAGAAAAAAAAACTCTAAACTGGGATTGTCCTAAAAGCATGAAC
ACATATTCTCACTTCTACACATTTGGCAATGAAAAAGCCATTCTCTTTTGTGTGAAGGAAACCC
TAAAATCCATCTTTACACCATTCTCTGCCTTTTTATCTCTCACTCATCAGCCTAAAGAGGGATG
TTTCGTTCTATGTATAGAAAAACCGTAAGCAAACTACACAATTTTACAGATTTAGCAGAGAAAA
CAAAGCTCTCCTTCACAATTTCCCCGCAGATTATTTCCGGTTTAGATCTTACCTAATTCTCAAA
ACGCTACGGCAGCCCCATCCACCCTAGTTAAGCTGTACATTACTTAAGGTCTTAAGCCATCTGG
GGCTGGGTTAGGGACTGCAAAGCCATTCTCCTCTCTGCATATAAGAAAAGAACCACTTAGAGAC
AATGAAATGTCATAAAAATGCTTATTTTGTCTCTCTTTCTCAAATAAATGCAGTAAATGCAATG
TGCTCATAGAAGAGAAGAGGAACATATACATACCTCCAGCAGCAACGAGTTTTTCAATACGCGC
AACGACATGCTTTCCATAAGTGTACTTTTTTAAAGCAGTAAGATGCACTTTGATGCGAGTAAGT
ATCAGCTCACGTTGTTGGTCATCACAGGTCTCCAAAACTTTCTGCACTACATAGTTTGCGAACT
GATCCTTCATCATCGCCTATATACCAAGAAGAAGAAGCTATGAGCTAATAGTTTCTTTATTTCC
CCCGACAATCATCTGAAATAAAGGTTTGACAGACCTGAAGAGGCTCGTTTTCATCAGTTGTTCC
CAGCATCTCATTCACAAGCAATTCTCGTTCCTCAGGACCTCCAAAAGTCAAACATTTCTCAACA
ACGTTTGATGCGAACTTCTGCTGGCTCATCTGAACAATCTTCCCCGCCAATTCTTTGATTATCA
CAGTGCGCTCATCAGGCTTTCCATGCTCCAGCACATGCTGTCCACAAAACATGTATCAGTTTTG
AGCAAAGTATAAAAAATCACCAGAAGGAGTAAAACTCATATCTTTTTACAAACCTGAACAACAT
AGTTTCCATACTGATCTTGGGCCAGCATACTAACAGTGGACAGGATTTCTTCCATAACCTTACT
CTGTGTATCAGGGTCATGGCAGTGTTCCAATACTCTCTGCAACAGGAGATGAAAAAGAGTTTTA
CATAGAAGCATAAGATCAAAAAAGGTGTCATCTTTCTCAATCACCAATAGCAAGAACCTGAATA
ACACGGCACCCATATGGGTGAGTGGAGAGGGTCACCACATGGCCAAAGAAAGTTGAAATAATAA
ACTCGATGTTTTCTTCAGGCACACATTCAATACACTTTTGAACCACATGGTTCCCATTCTGATC
ACGTACACATCGCATTACATGTCCATCAAGTTCTTTCACCATTTTAATTTTCTGGTCTAGATCA
ACCACCTCAATTGCCTAAAAAGGTAAACATATGAAAAATAATGAAACTCTTAACTGTTCTTGAG
AATGGAGAGAACAGTAAAACAGGTGGGAACTAGACTTTACCTTCTGGATGACACGGCAACCATA
CATCTGTAAGCTAAGAGGCAAAACATGGTCAAAGAGTTTCTCTGCCAATTCTCTCCTCTGTGGC
GGGAGTCCATGCTCAAAGAACTGTAGGAAGATAAGCAAAATTCAGGAATCACTCATCTTACTAT
GGCTTAACTTCAAAATAAAACCAAAGAGGAAGACTAAATAAATTACCTTCTGAATCACATAGTT
TCCAAAAACGTCAGTCATCAGGACAAGAGCTTGTGGCATGATCTCCTCATAGACCATGTTTTTC
TCATCAGTTGTTGCTGTCTCGAGTTTCTGCTGAATAAAGCGGCTTCCATATTGATCCGAACTGG
TCGGTCATGCCATGAAAATCCCCAAGTACGCGTTAGCTTGGGAAAAATTGTAAACAAGAGAAAA
TGTAAAAGACTTTCAAGGAAATACCTGAACTCCACAACATGGCCAGCTATTTCAGAAAGTTCAA
ATCCTCTTGTTTTGTTACTTTTGAACTCTTCAAGCATTGAAGATCCAAAGCCTTCATCAAAACT
AGCATCCATGTGCCAAGAACCCATTAACCCTCCCGAATAATTTCTTGTTGCAGAAGGAAATCGC
ATATTAACTTCATCCCGTCTCATAGGGCTATAAGGTGACATAAGAGAGTTTGGCATACCATGAT
GAGCCAATGGGCTGCCAGGATATGACATATTAGACCCAAATGTTGGACTCCCATAATAGCTATG
GCTGTTAGGGCTCCCGGATTTGTAAGGGACACCATACTGTGATTTCTGAGCTCCAAGATAAGCC
CTCTGGAGTTCAAGCATATCCATGTATGATGAACCACCCATAAAGTTCCTATCCATGGAAGGAT
CATTGAGAAGATCAAGTGAATCAGCATACTGATTATACATTGGGTCTACCATATGTGACTGGAG
ACCAGCACCTCCTCCCATCATTCGATTACTGAATCTGCCAAGATTACGTGATTCAGAGAGGTTT
TGACCAGAAGATACAAAGCCTCGTCCATGATGTCTAGAGTCCATTCCAGAAAATCCCAAAGCGG
ATACATTATCATACATTGGAGCAAAGTTATTGTTCCCAAGTTGGTTAGCCATCATAGAGGCTAC
AGCTGGATTTAATGCGTAATTGTTGAGACAATAATTTGGGCTATCAAGTTGCTGGTAAGGATTA
GCTAATCCAACTCCACCATTATAGGCAGATCCGTGTGGCCCTCTCAATTGTGAATTCCTCAACG
AGCCAGTTGCCTTATGGGCTTGATCAGATTTGTTTGGGAACTCATGTTGATTGACTTCGTTATG
CCCACCTTGCAGTCCAAACATATAGTTCCTGACCTTTTCGACATCTTGCTCAGCCTGACTCCGA
TCATCTAACCCAACACTGCATGACAGGTTCAAGCCAGATAAAGCATTGACAAGATCAGAAGACT
CGTTGAGACCAGAGGTAACACCATTGAATGGGCTCTGGTTACTTGTGTTCCTCTTATCATTTGA
ACTCATTCTTCCACTCCCAATGGGAGTAAGACAGGGACTAGGCACCCTAGCAATGGCCTGTGGA
TCTGGAGTTCCATTTCTAGACAAAGAAGAGCCTAGAACAGCTGCATAGCTGTATGGAGATGGTG
CACCAATGCCTTGTGATGCAGACGGAGACAGATTATTATTAGAGTCAACATTTTCATCAAAGGT
ATTACGACTTGCAGGACGTGAGGGCTGTTGTGCGACAGGATGTCCATGCCCCATATCAGC
Conservation Information
Conserved circRNAs NA
PMCS 0.831183004
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017