Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT2G29140_circ_g.3 |
ID in PlantcircBase | ath_circ_015480 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr2: 12531389-12533834 JBrowse» |
Reference genome | TAIR10.38 |
Type | ue-circRNA |
Identification method | PcircRNA_finder |
Parent gene | AT2G29140 |
Parent gene annotation |
Pumilio homolog 3 |
Parent gene strand | + |
Alternative splicing | AT2G29140_circ_g.1 AT2G29140_circ_g.2 AT2G29140_circ_g.4 AT2G29140_circ_g.5 2_circ_ag.6 AT2G29140_circ_g.7 AT2G29140_circ_g.8 AT2G29140_circ_g.9 AT2G29180_circ_g.1 AT2G29180_circ_g.2 AT2G29190_circ_g.1 AT2G29190_circ_g.2 2_circ_ag.3 2_circ_ag.4 AT2G29190_circ_g.5 2_circ_ag.6 AT2G29190_circ_g.7 2_circ_ag.8 AT2G29190_circ_g.9 2_circ_ag.10 2_circ_ag.11 2_circ_ag.12 2_circ_ag.13 AT2G29200_circ_g.1 |
Support reads | 6 |
Tissues | aerial |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT2G29140.2:4 AT2G29140.1:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.108824765 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
12531392-12533831(+) |
Potential amino acid sequence |
MMIPELGRRPMHRGNEDSSFGDDYEKEIGVLLGEQQRRQVEADELERELNLYRSGSAPPTVDGS LSAAGGLFSGGGGASFLEFGGVNKGNGFGGDDEEFRKDPAYLSYYYANMKLNPRLPPPLMSRED LRVAQRLKGSNNVLGGVGDRRKVNDSRSLFSMPPGFEAGKPGASASEWDANGLIGLGLGGKQKS FADIFQADMGHPVVQQPSRPASRNTFDENVDSNNNLSPSASQGIGAPSPYCYAAVLGSSLSRNG TPDPQGIARVPSPCLTPIGSGRVSSNDKRNTSNQSPFNGVTSGLNESSDLVNALSGLNLSGTGG LDERGQAEQDVEKVRNYMFGLQDGHNEVNPHGFPNRSDQARGTASCRNSQMRGSQGSAYNSGSG VANPYQHHDSPNYYALNPAVASMMANQLGTNNYSPMYENASATLGYSAMDSRLHGGSFVSSGQN LSESRNIGRVGNRMMEGGTGHPSHLADPMYHQYARFSENADSFDLLNDPSMDRNYGNSYMNMLE IQRAYLGSQKSQYGLPYKSGSPNSHSYYGSPTFGSNMSYPGSPLAHHGMPNSLMSPYSPMRRGE VNMRYPAATRNYTGGVMGSWHMDASLDEGFGSSMLEEFKSNKTRGFELSEIAGHVVEFSSDQYG SRFIQQKLETATTDEKNMVYEEIMPKALALMTDVFGNYVIQKFFEHGLPPQRRELGEKLIDNVL PLSLQMYGCRVIQKVMMIPELGRRPMHRGNEDSSFGDDYEKEIGVLLGEQQRRQVEADELEREL NLYRSGSAPPTVDGSLSAAGGLFSGGGGASFLEFGGVNKGNGFGGDDEEFRKDPAYLSYYYANM KLNPRLPPPLMSREDLRVAQRLKGSNNVLGGVGDRRKVNDSRSLFSMPPGFEAGKPGASASEWD ANGLIGLGLGGKQKSFADIFQADMGHPVVQQPSRPASRNTFDENVDSNNNLSPSASQGIGAPSP YCYAAVLGSSLSRNGTPDPQGIARVPSPCLTPIGSGRVSSNDKRNTSNQSPFNGVTSGLNESSD LVNALSGLNLSGTGGLDERGQAEQDVEKVRNYMFGLQDGHNEVNPHGFPNRSDQARGTASCRNS QMRGSQGSAYNSGSGVANPYQHHDSPNYYALNPAVASMMANQLGTNNYSPMYENASATLGYSAM DSRLHGGSFVSSGQNLSESRNIGRVGNRMMEGGTGHPSHLADPMYHQYARFSENADSFDLLNDP SMDRNYGNSYMNMLEIQRAYLGSQKSQYGLPYKSGSPNSHSYYGSPTFGSNMSYPGSPLAHHGM PNSLMSPYSPMRRGEVNMRYPAATRNYTGGVMGSWHMDASLDEGFGSSMLEEFKSNKTRGFELS EIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPKALALMTDVFGNYVIQKFFEHGLP PQRRELGEKLIDNVLPLSLQMYGCRVIQKVMMIPELGRRPMHRGNEDSSFGDDYEKEIGVLLGE QQRRQVEADELERELNLYRSGSAPPTVDGSLSAAGGLFSGGGGASFLEFGGVNKGNGFGGDDEE FRKDPAYLSYYYANMKLNPRLPPPLMSREDLRVAQRLKGSNNVLGGVGDRRKVNDSRSLFSMPP GFEAGKPGASASEWDANGLIGLGLGGKQKSFADIFQADMGHPVVQQPSRPASRNTFDENVDSNN NLSPSASQGIGAPSPYCYAAVLGSSLSRNGTPDPQGIARVPSPCLTPIGSGRVSSNDKRNTSNQ SPFNGVTSGLNESSDLVNALSGLNLSGTGGLDERGQAEQDVEKVRNYMFGLQDGHNEVNPHGFP NRSDQARGTASCRNSQMRGSQGSAYNSGSGVANPYQHHDSPNYYALNPAVASMMANQLGTNNYS PMYENASATLGYSAMDSRLHGGSFVSSGQNLSESRNIGRVGNRMMEGGTGHPSHLADPMYHQYA RFSENADSFDLLNDPSMDRNYGNSYMNMLEIQRAYLGSQKSQYGLPYKSGSPNSHSYYGSPTFG SNMSYPGSPLAHHGMPNSLMSPYSPMRRGEVNMRYPAATRNYTGGVMGSWHMDASLDEGFGSSM LEEFKSNKTRGFELSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPKALALMTDV FGNYVIQKFFEHGLPPQRRELGEKLIDNVLPLSLQMYGCRVIQKVMMIPELGRRPMHRGNEDSS FGDDYEKEIGVLLGEQQRRQVEADELERELNLYRSGSAPPTVDGSLSAAGGLFSGGGGASFLEF GGVNKGNGFGGDDEEFRKDPAYLSYYYANMKLNPRLPPPLMSREDLRVAQRLKGSNNVLGGVGD RRKVNDSRSLFSMPPGFEAGKPGASASEWDANGLIGLGLGGKQKSFADIFQADMGHPVVQQPSR PASRNTFDENVDSNNNLSPSASQGIGAPSPYCYAAVLGSSLSRNGTPDPQGIARVPSPCLTPIG SGRVSSNDKRNTSNQSPFNGVTSGLNESSDLVNALSGLNLSGTGGLDERGQAEQDVEKVRNYMF GLQDGHNEVNPHGFPNRSDQARGTASCRNSQMRGSQGSAYNSGSGVANPYQHHDSPNYYALNPA VASMMANQLGTNNYSPMYENASATLGYSAMDSRLHGGSFVSSGQNLSESRNIGRVGNRMMEGGT GHPSHLADPMYHQYARFSENADSFDLLNDPSMDRNYGNSYMNMLEIQRAYLGSQKSQYGLPYKS GSPNSHSYYGSPTFGSNMSYPGSPLAHHGMPNSLMSPYSPMRRGEVNMRYPAATRNYTGGVMGS WHMDASLDEGFGSSMLEEFKSNKTRGFELSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMV YEEIMPKALALMTDVFGNYVIQKFFEHGLPPQRRELGEKLIDNVLPLSLQMYGCRVIQK(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |