Detail information of AT2G29140_circ_g.3


General Information
CircRNA Name AT2G29140_circ_g.3
ID in PlantcircBase ath_circ_015480
Alias NA
Organism Arabidpsis thaliana
Position chr2: 12531389-12533834  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method PcircRNA_finder
Parent gene AT2G29140
Parent gene annotation Pumilio homolog 3
Parent gene strand +
Alternative splicing AT2G29140_circ_g.1 AT2G29140_circ_g.2 AT2G29140_circ_g.4 AT2G29140_circ_g.5 2_circ_ag.6 AT2G29140_circ_g.7 AT2G29140_circ_g.8 AT2G29140_circ_g.9 AT2G29180_circ_g.1 AT2G29180_circ_g.2 AT2G29190_circ_g.1 AT2G29190_circ_g.2 2_circ_ag.3 2_circ_ag.4 AT2G29190_circ_g.5 2_circ_ag.6 AT2G29190_circ_g.7 2_circ_ag.8 AT2G29190_circ_g.9 2_circ_ag.10 2_circ_ag.11 2_circ_ag.12 2_circ_ag.13 AT2G29200_circ_g.1
Support reads 6
Tissues aerial
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G29140.2:4
AT2G29140.1:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCATGGACTCCCACCACAGAGAAGAGAATTGGGAGAGAAACTCATTGACAATGTTTTGCCTCTT
AGCTTACAGATGTATGGTTGTCGTGTCATCCAGAAGgtgatgatgataccggaactagggagaa
gaccgatgcatagaggtaacgaagattcatcttttggggatgattacgagaaagagattggagt
attgcttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGATGATGATACCGGAACTAGGGAGAAGACCGATGCATAGAGGTAACGAAGATTCATCTTTTG
GGGATGATTACGAGAAAGAGATTGGAGTATTGCTTGGTGAGCAGCAGAGAAGGCAAGTAGAGGC
GGATGAGCTTGAGAGAGAGCTTAACTTGTATAGAAGTGGCTCTGCTCCACCGACTGTTGATGGT
TCTCTTAGTGCTGCCGGAGGGCTTTTTAGCGGCGGAGGTGGGGCTTCTTTTCTGGAATTTGGTG
GAGTTAATAAGGGTAATGGGTTTGGTGGTGATGATGAGGAGTTTAGGAAAGATCCAGCTTACTT
GTCTTATTACTATGCTAATATGAAGTTGAATCCGAGGTTGCCACCTCCTTTGATGTCTAGGGAG
GATTTGAGGGTTGCTCAGAGGCTTAAAGGGAGTAATAATGTGTTAGGTGGTGTTGGGGATAGGA
GAAAAGTGAATGACAGTCGGTCTTTGTTCTCTATGCCACCTGGTTTTGAGGCTGGAAAACCTGG
TGCTTCTGCTTCTGAGTGGGATGCTAATGGATTGATTGGTTTGGGACTTGGAGGCAAGCAGAAG
AGTTTTGCTGATATCTTTCAGGTTGGTTATTTTTTGATACTCTGCTAATGTTTCTCTGTGTGTA
TGTGTTGTGTATAGTTCTCCTGAATACTCTTGCTTATATAAACTTGGTGGATTACTTTTGTGTA
GGCGGATATGGGGCATCCTGTTGTACAGCAGCCCTCACGTCCTGCTAGTCGTAATACCTTTGAT
GAGAATGTTGACTCTAATAATAACCTGTCTCCATCTGCATCACAAGGCATTGGAGCGCCATCTC
CATACTGCTATGCAGCTGTTCTGGGTTCATCTTTGTCTAGAAATGGAACTCCAGATCCACAGGG
CATTGCTAGGGTGCCTAGTCCTTGCCTTACTCCCATTGGCAGTGGAAGAGTGAGTTCAAATGAT
AAGAGGAACACAAGTAATCAAAGCCCGTTCAACGGTGTTACATCTGGTCTCAACGAGTCTTCTG
ATCTTGTCAATGCTTTATCCGGCTTGAACCTGTCAGGCACTGGCGGGCTAGATGAACGTGGTCA
GGCTGAGCAAGATGTCGAAAAGGTCAGGAACTATATGTTTGGACTGCAAGATGGGCATAATGAA
GTCAATCCACATGGGTTCCCAAACAGATCTGATCAAGCTAGGGGAACTGCTTCGTGCAGGAATT
CACAAATGAGAGGGTCACAAGGATCTGCATATAATAGTGGAAGTGGAGTAGCTAATCCTTACCA
GCATCATGATAGCCCAAACTATTACGCATTAAATCCAGCTGTAGCTTCTATGATGGCTAACCAA
CTTGGAACTAATAACTATTCTCCAATGTATGAAAATGCTTCTGCCACTTTGGGATATTCTGCAA
TGGACTCCAGACTTCATGGTGGAAGTTTTGTTTCTTCTGGTCAAAACCTCTCTGAATCACGAAA
TATTGGCAGGGTCGGTAATCGAATGATGGAAGGAGGTACGGGTCACCCGTCACATCTTGCAGAC
CCGATGTATCATCAGTATGCAAGGTTCTCTGAAAATGCTGATTCGTTTGATCTTCTTAATGACC
CTTCAATGGACAGGAACTATGGTAATTCATACATGAATATGCTTGAAATTCAGAGGGCTTATCT
CGGATCTCAGAAATCACAGTATGGTCTTCCTTACAAATCAGGGAGCCCTAACAGCCATAGCTAT
TATGGCAGTCCAACATTTGGGTCTAATATGTCATATCCTGGCAGCCCATTGGCTCATCATGGTA
TGCCAAACTCTCTTATGTCACCTTACAGCCCTATGAGACGAGGTGAAGTAAATATGCGATATCC
CGCTGCAACAAGAAACTATACTGGAGGGGTAATGGGTTCTTGGCACATGGATGCTAGTTTGGAT
GAAGGATTTGGATCTTCAATGCTTGAAGAGTTCAAAAGTAACAAAACAAGAGGGTTCGAACTTT
CTGAAATAGCTGGCCATGTTGTAGAGTTCAGGTATTCCCTTTAAATTCTTTTACCTTTTTTCTT
GTGTACACTTTGTCCCAAGCTAACGCGTACTTGGGGATTTTCATGACCAGTTCGGATCAGTATG
GAAGCCGGTTTATTCAGCAGAAACTCGAGACAGCAACAACTGATGAGAAAAACATGGTTTATGA
GGAGATCATGCCAAAAGCTCTTGCCCTGATGACTGACGTTTTTGGAAACTATGTGATTCAGAAG
GTATAGATTTATTTAGTCTTCCTCTTTGATTTTATTTGGAGTTGAGAGTGAGACATAGTAACAT
GAGAGATTCCTGGATGTTGCTTATCTTCCTACAGTTCTTTGAGCATGGACTCCCACCACAGAGA
AGAGAATTGGGAGAGAAACTCATTGACAATGTTTTGCCTCTTAGCTTACAGATGTATGGTTGTC
GTGTCATCCAGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.108824765
Functional Information
Coding potential Y
Potential coding position 12531392-12533831(+)
Potential amino acid sequence MMIPELGRRPMHRGNEDSSFGDDYEKEIGVLLGEQQRRQVEADELERELNLYRSGSAPPTVDGS
LSAAGGLFSGGGGASFLEFGGVNKGNGFGGDDEEFRKDPAYLSYYYANMKLNPRLPPPLMSRED
LRVAQRLKGSNNVLGGVGDRRKVNDSRSLFSMPPGFEAGKPGASASEWDANGLIGLGLGGKQKS
FADIFQADMGHPVVQQPSRPASRNTFDENVDSNNNLSPSASQGIGAPSPYCYAAVLGSSLSRNG
TPDPQGIARVPSPCLTPIGSGRVSSNDKRNTSNQSPFNGVTSGLNESSDLVNALSGLNLSGTGG
LDERGQAEQDVEKVRNYMFGLQDGHNEVNPHGFPNRSDQARGTASCRNSQMRGSQGSAYNSGSG
VANPYQHHDSPNYYALNPAVASMMANQLGTNNYSPMYENASATLGYSAMDSRLHGGSFVSSGQN
LSESRNIGRVGNRMMEGGTGHPSHLADPMYHQYARFSENADSFDLLNDPSMDRNYGNSYMNMLE
IQRAYLGSQKSQYGLPYKSGSPNSHSYYGSPTFGSNMSYPGSPLAHHGMPNSLMSPYSPMRRGE
VNMRYPAATRNYTGGVMGSWHMDASLDEGFGSSMLEEFKSNKTRGFELSEIAGHVVEFSSDQYG
SRFIQQKLETATTDEKNMVYEEIMPKALALMTDVFGNYVIQKFFEHGLPPQRRELGEKLIDNVL
PLSLQMYGCRVIQKVMMIPELGRRPMHRGNEDSSFGDDYEKEIGVLLGEQQRRQVEADELEREL
NLYRSGSAPPTVDGSLSAAGGLFSGGGGASFLEFGGVNKGNGFGGDDEEFRKDPAYLSYYYANM
KLNPRLPPPLMSREDLRVAQRLKGSNNVLGGVGDRRKVNDSRSLFSMPPGFEAGKPGASASEWD
ANGLIGLGLGGKQKSFADIFQADMGHPVVQQPSRPASRNTFDENVDSNNNLSPSASQGIGAPSP
YCYAAVLGSSLSRNGTPDPQGIARVPSPCLTPIGSGRVSSNDKRNTSNQSPFNGVTSGLNESSD
LVNALSGLNLSGTGGLDERGQAEQDVEKVRNYMFGLQDGHNEVNPHGFPNRSDQARGTASCRNS
QMRGSQGSAYNSGSGVANPYQHHDSPNYYALNPAVASMMANQLGTNNYSPMYENASATLGYSAM
DSRLHGGSFVSSGQNLSESRNIGRVGNRMMEGGTGHPSHLADPMYHQYARFSENADSFDLLNDP
SMDRNYGNSYMNMLEIQRAYLGSQKSQYGLPYKSGSPNSHSYYGSPTFGSNMSYPGSPLAHHGM
PNSLMSPYSPMRRGEVNMRYPAATRNYTGGVMGSWHMDASLDEGFGSSMLEEFKSNKTRGFELS
EIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPKALALMTDVFGNYVIQKFFEHGLP
PQRRELGEKLIDNVLPLSLQMYGCRVIQKVMMIPELGRRPMHRGNEDSSFGDDYEKEIGVLLGE
QQRRQVEADELERELNLYRSGSAPPTVDGSLSAAGGLFSGGGGASFLEFGGVNKGNGFGGDDEE
FRKDPAYLSYYYANMKLNPRLPPPLMSREDLRVAQRLKGSNNVLGGVGDRRKVNDSRSLFSMPP
GFEAGKPGASASEWDANGLIGLGLGGKQKSFADIFQADMGHPVVQQPSRPASRNTFDENVDSNN
NLSPSASQGIGAPSPYCYAAVLGSSLSRNGTPDPQGIARVPSPCLTPIGSGRVSSNDKRNTSNQ
SPFNGVTSGLNESSDLVNALSGLNLSGTGGLDERGQAEQDVEKVRNYMFGLQDGHNEVNPHGFP
NRSDQARGTASCRNSQMRGSQGSAYNSGSGVANPYQHHDSPNYYALNPAVASMMANQLGTNNYS
PMYENASATLGYSAMDSRLHGGSFVSSGQNLSESRNIGRVGNRMMEGGTGHPSHLADPMYHQYA
RFSENADSFDLLNDPSMDRNYGNSYMNMLEIQRAYLGSQKSQYGLPYKSGSPNSHSYYGSPTFG
SNMSYPGSPLAHHGMPNSLMSPYSPMRRGEVNMRYPAATRNYTGGVMGSWHMDASLDEGFGSSM
LEEFKSNKTRGFELSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMVYEEIMPKALALMTDV
FGNYVIQKFFEHGLPPQRRELGEKLIDNVLPLSLQMYGCRVIQKVMMIPELGRRPMHRGNEDSS
FGDDYEKEIGVLLGEQQRRQVEADELERELNLYRSGSAPPTVDGSLSAAGGLFSGGGGASFLEF
GGVNKGNGFGGDDEEFRKDPAYLSYYYANMKLNPRLPPPLMSREDLRVAQRLKGSNNVLGGVGD
RRKVNDSRSLFSMPPGFEAGKPGASASEWDANGLIGLGLGGKQKSFADIFQADMGHPVVQQPSR
PASRNTFDENVDSNNNLSPSASQGIGAPSPYCYAAVLGSSLSRNGTPDPQGIARVPSPCLTPIG
SGRVSSNDKRNTSNQSPFNGVTSGLNESSDLVNALSGLNLSGTGGLDERGQAEQDVEKVRNYMF
GLQDGHNEVNPHGFPNRSDQARGTASCRNSQMRGSQGSAYNSGSGVANPYQHHDSPNYYALNPA
VASMMANQLGTNNYSPMYENASATLGYSAMDSRLHGGSFVSSGQNLSESRNIGRVGNRMMEGGT
GHPSHLADPMYHQYARFSENADSFDLLNDPSMDRNYGNSYMNMLEIQRAYLGSQKSQYGLPYKS
GSPNSHSYYGSPTFGSNMSYPGSPLAHHGMPNSLMSPYSPMRRGEVNMRYPAATRNYTGGVMGS
WHMDASLDEGFGSSMLEEFKSNKTRGFELSEIAGHVVEFSSDQYGSRFIQQKLETATTDEKNMV
YEEIMPKALALMTDVFGNYVIQKFFEHGLPPQRRELGEKLIDNVLPLSLQMYGCRVIQK(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017