Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G17840_circ_g.3 |
ID in PlantcircBase | ath_circ_003168 |
Alias | At_ciR3179 |
Organism | Arabidpsis thaliana |
Position | chr1: 6144317-6144727 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | AT1G17840 |
Parent gene annotation |
ABC transporter G family member 11 |
Parent gene strand | + |
Alternative splicing | AT1G17840_circ_g.2 AT1G17840_circ_g.4 |
Support reads | 2 |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G17840.1:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.282243431 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
6144617-6144724(+) |
Potential amino acid sequence |
MSRDFGYYWLRLLIYILVTVCIGTIYLNVGTSYSAILFEASDDPLEKITTAEAIRLLVDYYHTS DYYYTAKAKVEEISQFKGTILDSGGSQASFLLQTYTLTKRSFINMSRDFGYYWLRLLIYILVTV CIGTIYLNVGTSYSAILFEASDDPLEKITTAEAIRLLVDYYHTSDYYYTAKAKVEEISQFKGTI LDSGGSQASFLLQTYTLTKRSFINMSRDFGYYWLRLLIYILVTVCIGTIYLNVGTSYSAILFEA SDDPLEKITTAEAIRLLVDYYHTSDYYYTAKAKVEEISQFKGTILDSGGSQASFLLQTYTLTKR SFINMSRDFGYYWLRLLIYILVTVCIGTIYLNVGTSYSAIL(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015 |