Detail information of Os11g0139700_circ_g.9


General Information
CircRNA Name Os11g0139700_circ_g.9
ID in PlantcircBase osa_circ_008412
Alias Os_ciR5186
Organism Oryza sativa
Position chr11: 1837413-1837730  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method find_circ
Parent gene Os11g0139700
Parent gene annotation Hypothetical conserved gene. (Os11t0139700-01)
Parent gene strand -
Alternative splicing Os11g0139700_circ_g.2 Os11g0139700_circ_g.3 Os11g0139700_circ_g.4 Os11g0139700_circ_g.5 Os11g0139700_circ_g.6 Os11g0139700_circ_g.7 Os11g0139700_circ_g.8
Support reads 3
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os11t0139700-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAACTAGAAACCGGACCGAACCGATCAAAGCACCACCTGATGATCAAATCAACAAAAGGGCAG
CGAACCAGGTGAGATCGAAACCGATGGATCCCTTACccaaaatatccacggtacagcttaatta
agctgacaatccatctcaccgaacagaaagtgaagcaaaccaaccgacctcgcaatcagtattg
ccagaaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCAAAATATCCACGGTACAGCTTAATTAAGCTGACAATCCATCTCACCGAACAGAAAGTGAAGC
AAACCAACCGACCTCGCAATCAGTATTGCCAGAACAACAAATCACGATTAGCCATAAACCAATC
GAAAGAAGGGCCGTTGAGAGAACTAACGCAACAGCAAGAGACGAATCGCCGAAACTAGACCCCC
AAAACCGAACGGATCAAGCAGTCACCGAAACTAGAAACCGGACCGAACCGATCAAAGCACCACC
TGATGATCAAATCAACAAAAGGGCAGCGAACCAGGTGAGATCGAAACCGATGGATCCCTTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.110324948
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015