Detail information of Os11g0139700_circ_g.5


General Information
CircRNA Name Os11g0139700_circ_g.5
ID in PlantcircBase osa_circ_008408
Alias Os_ciR3654
Organism Oryza sativa
Position chr11: 1837169-1837364  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method find_circ
Parent gene Os11g0139700
Parent gene annotation Hypothetical conserved gene. (Os11t0139700-01)
Parent gene strand -
Alternative splicing Os11g0139700_circ_g.2 Os11g0139700_circ_g.3 Os11g0139700_circ_g.4 Os11g0139700_circ_g.6 Os11g0139700_circ_g.7 Os11g0139700_circ_g.8 Os11g0139700_circ_g.9
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os11t0139700-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGCTGCCGAATTGTCTCGAACTACCAAGCATCACAAATGCACAAACTTGAAAGGAACAGAACA
ATAATCAACAATAATCTTAGGCCAGTGAGCAATCctaagaaagccaccacgatcatgtttaaat
gttctgatatgacttgaccttatatcataaaaaataccagatctgaaggaaaaattgtatataa
ttgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTAAGAAAGCCACCACGATCATGTTTAAATGTTCTGATATGACTTGACCTTATATCATAAAAAA
TACCAGATCTGAAGGAAAAATTGTATATAATTGTAAGCTGCCGAATTGTCTCGAACTACCAAGC
ATCACAAATGCACAAACTTGAAAGGAACAGAACAATAATCAACAATAATCTTAGGCCAGTGAGC
AATC
Conservation Information
Conserved circRNAs osi_circ_009062
PMCS 0.38816369
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015