Plant Circular RNA Database

Detail information of AT5G27360_circ_g.2

			
						 General Information
					
						CircRNA Name
						AT5G27360_circ_g.2
					
						ID in PlantcircBase
						ath_circ_040737
					
						Alias
						NA
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr5: 9657829-9661884  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer, PcircRNA_finder
					
						Parent gene
						
							AT5G27360						
					
						Parent gene annotation
						
							Major facilitator superfamily protein
							
						Parent gene strand
						+
					
						Alternative splicing
						
							AT5G27350_circ_g.1 AT5G27350_circ_g.2 AT5G27350_circ_g.3 AT5G27350_circ_g.4 AT5G27350_circ_g.5 5_circ_ag.6 AT5G27350_circ_g.7 AT5G27350_circ_g.8 AT5G27350_circ_g.9 AT5G27350_circ_g.10 AT5G27350_circ_g.11 AT5G27350_circ_g.12 AT5G27350_circ_g.13 5_circ_ag.14 AT5G27350_circ_g.15 5_circ_ag.16 AT5G27350_circ_g.17 5_circ_ag.18 AT5G27350_circ_g.19 AT5G27360_circ_g.1 AT5G27360_circ_g.3 AT5G27360_circ_g.4 AT5G27360_circ_g.5 AT5G27360_circ_g.6 						
					
						Support reads
						1
					
						Tissues
						inflorescences
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT5G27360.1:16
AT5G27360.2:15
AT5G27360.3:16
AT5G27360.5:14
AT5G27360.4:16

General Information
CircRNA Name	AT5G27360_circ_g.2
ID in PlantcircBase	ath_circ_040737
Alias	NA
Organism	Arabidpsis thaliana
Position	chr5: 9657829-9661884 JBrowse»
Reference genome	TAIR10.38
Type	ue-circRNA
Identification method	CIRCexplorer, PcircRNA_finder
Parent gene	AT5G27360
Parent gene annotation	Major facilitator superfamily protein
Parent gene strand	+
Alternative splicing	AT5G27350_circ_g.1 AT5G27350_circ_g.2 AT5G27350_circ_g.3 AT5G27350_circ_g.4 AT5G27350_circ_g.5 5_circ_ag.6 AT5G27350_circ_g.7 AT5G27350_circ_g.8 AT5G27350_circ_g.9 AT5G27350_circ_g.10 AT5G27350_circ_g.11 AT5G27350_circ_g.12 AT5G27350_circ_g.13 5_circ_ag.14 AT5G27350_circ_g.15 5_circ_ag.16 AT5G27350_circ_g.17 5_circ_ag.18 AT5G27350_circ_g.19 AT5G27360_circ_g.1 AT5G27360_circ_g.3 AT5G27360_circ_g.4 AT5G27360_circ_g.5 AT5G27360_circ_g.6
Support reads	1
Tissues	inflorescences
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT5G27360.1:16 AT5G27360.2:15 AT5G27360.3:16 AT5G27360.5:14 AT5G27360.4:16

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ATAAAAGTAACTGCAGGAAGTATAGTAACGTTAGTATCATGGTCAAGTAGTTCGATCGTCACTT
ATGCTTTCAACTTTCTGCTCGAGTGGAGCACTCAAGcttggttatacttcaggtgcagagatag
gaattatgaaggacttggatctttctatcgcgcaagtatgtcttcttctttttttttcttgtgc
aaatcgcc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTTGGTTATACTTCAGGTGCAGAGATAGGAATTATGAAGGACTTGGATCTTTCTATCGCGCAAG
TATGTCTTCTTCTTTTTTTTTCTTGTGCAAATCGCCCAAGTATGTCTATCTTTTGTTCTTTTCC
ATCAACATTTATTAAATTAATCAAGTCACAAGTTGTTTATATTAAGTTATTAACCGTAATGTAA
ATAAAAGAAAATAATAGTGGTAGTCTGGTAGATGGCGAAAAGACACATTGTGACATTGATCAGT
GTCTTAAGGGAGATGATCAGTGTACTTAAGGGAGGTGATCAGAGCTGTCCAAATAGACATGAAT
TTATGTATAGTCCTATTAGATCAGTATTAAAATTTCACATCTATTTAAATTCCATATTATTCTT
TGTCAGATTGTAATAATTAATAATTTCTTATGAAGAGAAATATATGCTGTCGTTATCCCAATGA
AGCTGCACTTGGTTGGCTTGTAGGCTTGTGGGGGTCACCTCCATTTTTACTCCTTTTTCGAACT
TCTTATCATAAATAGTAACCTTACGAAAAATGTTATAGTTCTATATTTATTAAAGATACACAAA
ATGAAATACACCGAAAACAGAATTGTAAAATAACATTCAATCATATAGTTGTAAAATACCATTC
AATAGATAGATGACAAACTATATATAAGTTTTTTTTTTTTAGAAATTAATATCGCAATAAAAAA
AAAATATTAAACTCAACTTCTGCAGTTTGTCTTTGAGTTAATATTTTTTTAACAGTTTTCAGCA
TTTGCTTCATTATCCACTTTGGGAGCTGCAATTGGAGCTTTGTTTAGCGGTAAAATGGCGATCA
TCCTTGGCAGAAGAAAAGTACTTTAATTACATTTTCACTCTTTCATATTCTTAAGTATGGTTTG
ATAATCAAATTTTACCTTTTCTGACTAAAATTTTTCGTATATATGTTTTTGTATATTTTCGTAT
CTGTTTGCTACTAATGACAATATTGCTTTTCACGAATTAAAGACAATGTGGGTGTCCGATCTCC
TCTGTATCATTGGTTGGTTCTCCATCGCTTTCGCTAAGGTATGTGAAATATTCCTTACCACAAA
CTTGGGACCGCAAACTTATTATTTGTACTGTTAGTACTTAGAAGATTAACAAACTGTTTATCAT
GAAACCCAAGAATTAGTTAATCATTTATATTATGTTTGGAACACAAAAGGATGTGATGTGGTTG
AACTTCGGAAGAATCTCCTCAGGGATAGGACTCGGCTTAATTAGCTATGTGGTAATTAACCTAA
TATATTTAATATAGCCTTAATTACCTTGTTTTTATTTACTTATATCATCTATATATAAAGTTAT
TTTAAAATAATTTAATGCTATTTACTGAACAGGTACCTGTCTATATAGCAGAAATTTCACCAAA
ACATGTTCGTGGTACATTTACCTTTACAAATCAGGTAATATATTTGTTCTATAAATATATAAGG
ATCAGCATCGACACAAAAAATAGAAATATAGAATTTCTCACCCATGTGACCAAATTATGCTAGA
ACTAAGCAGAAGAAATAAATCAATTGTGGGGACATATATGATCTCGACAGAAGCAACAAAACTT
TTATCAAATATTGAGTAAATAATAATTTTGTCAAAATCCAATATATGTCTTCGTATTTTTTAAA
ATGTCAAAACGAAATCTGTGTAAATTTTTATATTATACTTGTTAGCTTTCTCTTGAGTTTGACC
CTTTTGATTCTCGTGTGATTGACTGATTATTAGCTCCTTCAAAACTCTGGACTCGCAATGGTTT
ATTTTTCTGGGAATTTTCTCAACTGGAGGATATTGGCTTTATTAGGTAAATGTTACTAATTTAT
GATTTTTAACAGTAAAACTGTTATTTATATTTGATGTGGAAAAGATAATTTACATACAGTAAAA
GATGAATAAATAGCAAGAAGAATGTGGAAAACCTTGAGTTGTTATATTACAAGATTATACATAT
AAATGTGTATTTTTCTGGTTTAGGTGCTTTACCATGCTTCATTCAAGTAATCGGTTTATTCTTC
GTACCAGAGTCCCCAAGATGGCTGGTTGGTCATTTATTATAAATATTTTTTAAGAAACCCCATT
ACATAATTTATTAACCATGCATGAGAAGAAATGAAATGAAGCTAAACTATTTTAATTTTTGAAG
GCAAAAGTTGGCTCCGATAAAGAACTAGAAAATTCACTTCTTCGTCTTAGGGGGGGAAATGCTG
ATATTTCACGTGAAGCCTCAGACATTGAAGTGAGTTTTATAATATATATGATAGTATTATTATT
ATAAATTACTTTTAGTTTATATACACTCTTTTACAAATAGAACAATGTAAAGTCTCAGTGATTT
TTGTTTTATTTTCAGGTTATGACCAAAATGGTAGAAAATGATTCAAAGTCGAGTTTTTGTGATT
TGTTCCAGAGAAAATATAGATACACTCTCGTGGTACAGTAAAATTAAGTCAAGTGTTACGAAAT
TAGTTCCTAATTAATTTTCATATTTATCTACACAAGCATTGAACTTGTGTGTTTGATTTCTCAG
GTAGGAATCGGGCTAATGTTGATACAACAATTTTCAGGAAGTTCTGCAGTGCTCTCATATGCCA
GTACCATTTTACGGAAAGCAGGTAACATTAAGTTTTATTACTTCTTATATCAAATATCAGCTAT
AATAATCATCAATAGATTGACAAAAAACAGTAAAAAATTTTTTTACATACACACTAACATACAG
CAATCTGTCTAACATATAGTTTTCCAAATTTTGTGAGACTTTTTAAGAAATAAATATATTTTCT
CTACTATTTTTATTTTTGAACAAATATATTTTCTACTATTGTTATTGATTTTTCATTCCGATAC
CACCATCTCGATAAATAATTTAGGGCATTGGGGTTTGAACTTCAAGATATCCAGAAACAAAAAG
ATAAATAATTTCGGAGATTTATTTGAAAAATAAAATATTTACTTGAGTTCTCTTACAGTTTTAG
TTTTTTCTATACAGGTTTTTCGGTGACCATTGGATCGACGCTACTAGGTCTCTTCATGGTAATT
ACGCAATCAAACTATATTACAGTTTTAATATTTTCTATACATATTTTTGACTATATGGATGCAG
GATGACACATTTAGCAATCAAACTATATAACTTAATTTATATTTGTTTCTAAGATATTATTTAA
AATGATATAGAGTGAGGACAATATAGTTTTAGAATTTTACAAAATAATCAACATATCTTTTCGT
AAAACTTTCAAAATTCAATGAACTTTATATATATGCTTATGTTTTCTTTGATAATTAGAATTTC
ATTTTGTAATATTCGCAGATACCAAAAGCCATGATTGGTGTCATTCTTGTCGATAAATGGGGCA
GACGGCCTCTCTTGTTGGTGAGCACCTTTAAGACATTTATTTTCTTATTACCAATAAATAGAAA
GTTGAAAAGCTGTTTTAATGTTGATCTAATTCCTATTCGGACATATAGACTTCTGTATCTGGGA
TGTGCATAACTTCCATGCTTATTGGAGTCGCCTTCACATTACAGGTTCTGTTAAATATTTTCTT
AGTGTCTATAACATAATTTATGTTCAAAAATTTTTGGTATATTAATATGGTTGGAACAGAAAAT
GCAATTGCTACCGGAGCTAACACCAGTATTCACGTTTATATGCGTTACGGTAATTTTTCAAAAA
TCTACTTTCACCGTAATAAACATCGTTGTGGTATTTTTTTTTCTTCTAAAATATTGAGTTTCTT
GATTGGCAGCTGTATATTGGAACTTATGCTATAGGCTTGGGAGGCCTTCCTTGGGTAATTATGT
CTGAGGTACATAATTTTAGCTTCACTTTTATTTTCAATGCAGAAAATAAGTATTTGTTTTGTAA
ATGAAGTAATTATATGTATAATTTTTGTTGTGTGCAGATATTTCCAATGAATATAAAAGTAACT
GCAGGAAGTATAGTAACGTTAGTATCATGGTCAAGTAGTTCGATCGTCACTTATGCTTTCAACT
TTCTGCTCGAGTGGAGCACTCAAG
						
					

			
		

Sequences
Splice junction sequence	ATAAAAGTAACTGCAGGAAGTATAGTAACGTTAGTATCATGGTCAAGTAGTTCGATCGTCACTT ATGCTTTCAACTTTCTGCTCGAGTGGAGCACTCAAGcttggttatacttcaggtgcagagatag gaattatgaaggacttggatctttctatcgcgcaagtatgtcttcttctttttttttcttgtgc aaatcgcc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTTGGTTATACTTCAGGTGCAGAGATAGGAATTATGAAGGACTTGGATCTTTCTATCGCGCAAG TATGTCTTCTTCTTTTTTTTTCTTGTGCAAATCGCCCAAGTATGTCTATCTTTTGTTCTTTTCC ATCAACATTTATTAAATTAATCAAGTCACAAGTTGTTTATATTAAGTTATTAACCGTAATGTAA ATAAAAGAAAATAATAGTGGTAGTCTGGTAGATGGCGAAAAGACACATTGTGACATTGATCAGT GTCTTAAGGGAGATGATCAGTGTACTTAAGGGAGGTGATCAGAGCTGTCCAAATAGACATGAAT TTATGTATAGTCCTATTAGATCAGTATTAAAATTTCACATCTATTTAAATTCCATATTATTCTT TGTCAGATTGTAATAATTAATAATTTCTTATGAAGAGAAATATATGCTGTCGTTATCCCAATGA AGCTGCACTTGGTTGGCTTGTAGGCTTGTGGGGGTCACCTCCATTTTTACTCCTTTTTCGAACT TCTTATCATAAATAGTAACCTTACGAAAAATGTTATAGTTCTATATTTATTAAAGATACACAAA ATGAAATACACCGAAAACAGAATTGTAAAATAACATTCAATCATATAGTTGTAAAATACCATTC AATAGATAGATGACAAACTATATATAAGTTTTTTTTTTTTAGAAATTAATATCGCAATAAAAAA AAAATATTAAACTCAACTTCTGCAGTTTGTCTTTGAGTTAATATTTTTTTAACAGTTTTCAGCA TTTGCTTCATTATCCACTTTGGGAGCTGCAATTGGAGCTTTGTTTAGCGGTAAAATGGCGATCA TCCTTGGCAGAAGAAAAGTACTTTAATTACATTTTCACTCTTTCATATTCTTAAGTATGGTTTG ATAATCAAATTTTACCTTTTCTGACTAAAATTTTTCGTATATATGTTTTTGTATATTTTCGTAT CTGTTTGCTACTAATGACAATATTGCTTTTCACGAATTAAAGACAATGTGGGTGTCCGATCTCC TCTGTATCATTGGTTGGTTCTCCATCGCTTTCGCTAAGGTATGTGAAATATTCCTTACCACAAA CTTGGGACCGCAAACTTATTATTTGTACTGTTAGTACTTAGAAGATTAACAAACTGTTTATCAT GAAACCCAAGAATTAGTTAATCATTTATATTATGTTTGGAACACAAAAGGATGTGATGTGGTTG AACTTCGGAAGAATCTCCTCAGGGATAGGACTCGGCTTAATTAGCTATGTGGTAATTAACCTAA TATATTTAATATAGCCTTAATTACCTTGTTTTTATTTACTTATATCATCTATATATAAAGTTAT TTTAAAATAATTTAATGCTATTTACTGAACAGGTACCTGTCTATATAGCAGAAATTTCACCAAA ACATGTTCGTGGTACATTTACCTTTACAAATCAGGTAATATATTTGTTCTATAAATATATAAGG ATCAGCATCGACACAAAAAATAGAAATATAGAATTTCTCACCCATGTGACCAAATTATGCTAGA ACTAAGCAGAAGAAATAAATCAATTGTGGGGACATATATGATCTCGACAGAAGCAACAAAACTT TTATCAAATATTGAGTAAATAATAATTTTGTCAAAATCCAATATATGTCTTCGTATTTTTTAAA ATGTCAAAACGAAATCTGTGTAAATTTTTATATTATACTTGTTAGCTTTCTCTTGAGTTTGACC CTTTTGATTCTCGTGTGATTGACTGATTATTAGCTCCTTCAAAACTCTGGACTCGCAATGGTTT ATTTTTCTGGGAATTTTCTCAACTGGAGGATATTGGCTTTATTAGGTAAATGTTACTAATTTAT GATTTTTAACAGTAAAACTGTTATTTATATTTGATGTGGAAAAGATAATTTACATACAGTAAAA GATGAATAAATAGCAAGAAGAATGTGGAAAACCTTGAGTTGTTATATTACAAGATTATACATAT AAATGTGTATTTTTCTGGTTTAGGTGCTTTACCATGCTTCATTCAAGTAATCGGTTTATTCTTC GTACCAGAGTCCCCAAGATGGCTGGTTGGTCATTTATTATAAATATTTTTTAAGAAACCCCATT ACATAATTTATTAACCATGCATGAGAAGAAATGAAATGAAGCTAAACTATTTTAATTTTTGAAG GCAAAAGTTGGCTCCGATAAAGAACTAGAAAATTCACTTCTTCGTCTTAGGGGGGGAAATGCTG ATATTTCACGTGAAGCCTCAGACATTGAAGTGAGTTTTATAATATATATGATAGTATTATTATT ATAAATTACTTTTAGTTTATATACACTCTTTTACAAATAGAACAATGTAAAGTCTCAGTGATTT TTGTTTTATTTTCAGGTTATGACCAAAATGGTAGAAAATGATTCAAAGTCGAGTTTTTGTGATT TGTTCCAGAGAAAATATAGATACACTCTCGTGGTACAGTAAAATTAAGTCAAGTGTTACGAAAT TAGTTCCTAATTAATTTTCATATTTATCTACACAAGCATTGAACTTGTGTGTTTGATTTCTCAG GTAGGAATCGGGCTAATGTTGATACAACAATTTTCAGGAAGTTCTGCAGTGCTCTCATATGCCA GTACCATTTTACGGAAAGCAGGTAACATTAAGTTTTATTACTTCTTATATCAAATATCAGCTAT AATAATCATCAATAGATTGACAAAAAACAGTAAAAAATTTTTTTACATACACACTAACATACAG CAATCTGTCTAACATATAGTTTTCCAAATTTTGTGAGACTTTTTAAGAAATAAATATATTTTCT CTACTATTTTTATTTTTGAACAAATATATTTTCTACTATTGTTATTGATTTTTCATTCCGATAC CACCATCTCGATAAATAATTTAGGGCATTGGGGTTTGAACTTCAAGATATCCAGAAACAAAAAG ATAAATAATTTCGGAGATTTATTTGAAAAATAAAATATTTACTTGAGTTCTCTTACAGTTTTAG TTTTTTCTATACAGGTTTTTCGGTGACCATTGGATCGACGCTACTAGGTCTCTTCATGGTAATT ACGCAATCAAACTATATTACAGTTTTAATATTTTCTATACATATTTTTGACTATATGGATGCAG GATGACACATTTAGCAATCAAACTATATAACTTAATTTATATTTGTTTCTAAGATATTATTTAA AATGATATAGAGTGAGGACAATATAGTTTTAGAATTTTACAAAATAATCAACATATCTTTTCGT AAAACTTTCAAAATTCAATGAACTTTATATATATGCTTATGTTTTCTTTGATAATTAGAATTTC ATTTTGTAATATTCGCAGATACCAAAAGCCATGATTGGTGTCATTCTTGTCGATAAATGGGGCA GACGGCCTCTCTTGTTGGTGAGCACCTTTAAGACATTTATTTTCTTATTACCAATAAATAGAAA GTTGAAAAGCTGTTTTAATGTTGATCTAATTCCTATTCGGACATATAGACTTCTGTATCTGGGA TGTGCATAACTTCCATGCTTATTGGAGTCGCCTTCACATTACAGGTTCTGTTAAATATTTTCTT AGTGTCTATAACATAATTTATGTTCAAAAATTTTTGGTATATTAATATGGTTGGAACAGAAAAT GCAATTGCTACCGGAGCTAACACCAGTATTCACGTTTATATGCGTTACGGTAATTTTTCAAAAA TCTACTTTCACCGTAATAAACATCGTTGTGGTATTTTTTTTTCTTCTAAAATATTGAGTTTCTT GATTGGCAGCTGTATATTGGAACTTATGCTATAGGCTTGGGAGGCCTTCCTTGGGTAATTATGT CTGAGGTACATAATTTTAGCTTCACTTTTATTTTCAATGCAGAAAATAAGTATTTGTTTTGTAA ATGAAGTAATTATATGTATAATTTTTGTTGTGTGCAGATATTTCCAATGAATATAAAAGTAACT GCAGGAAGTATAGTAACGTTAGTATCATGGTCAAGTAGTTCGATCGTCACTTATGCTTTCAACT TTCTGCTCGAGTGGAGCACTCAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.101294151

Conservation Information
Conserved circRNAs	NA
PMCS	0.101294151

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of AT5G27360_circ_g.2

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