Detail information of BGIOSGA022796_circ_g.1


General Information
CircRNA Name BGIOSGA022796_circ_g.1
ID in PlantcircBase osi_circ_006687
Alias 6:13160777|13163940
Organism Oryza sativa ssp. indica
Position chr6: 13160777-13163940  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA022796
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA022796_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA022796-TA:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCTTTGGAGCATAAAGTTGGAAGTAATGGGGGCAAAGCAGGAACCACAGGTTCACCTGACAAC
AATCATCTGAAGCGTAAAGCTGAGGAAGAGCTTGAGgttcatggccccggtgcagatattgata
cgctttgtgtgggtccaaggcatgcaactcgaactgtaagaggaactgctttggatttcgtgga
attttgag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTCATGGCCCCGGTGCAGATATTGATACGCTTTGTGTGGGTCCAAGGCATGCAACTCGAACTG
TAAGAGGAACTGCTTTGGATTTCGTGGAATTTTGAGTGCATTGCATAGTTTGCTTTATAAAATG
CACTTCTTTTGCAGGAATACTTTTTCCAGGCTCTTTATGATATGCTAGTTGATATGCCAGAGGT
CACAGAGTTACATCCAGTGCCAGATGCTCATGTTCCTGTTTTGAAATTCAAACTTAATGGGGTT
TCTATTGATCTTTTATATGCTAATCTTACACATGTTGTTATTCCTGAGGTAAGTTCTGTTTTAT
ATCTTTCTTAGTGTAACAGGCAGTAGTCTGGGGTTTCTTGCATGCTACATAACTAGATTGACTG
TATGGAAGTGCTCACTTCTTATATTTATTCATTTTATATCTTATGATGTAATACAATATTACAC
TTATGAATGTTTTTTATGGCACTTCCTTTTAACATTAGTTGCTCCATCATTTTCTTATAAGCAT
CCCTAATAATGCTACATCATTTCATTGCAGGACCTGGATCTTTCGCATGACTCTATATTGCACA
ACGTTGACGAACAAACTGTCCGAAGTCTTAATGGATGCCGAGTTACTGATAAAATTCTACGATT
GGTTCCAAATATTCTGGTTTGCACCTCCTGCATTGTCTATTTTTCAGATGATATGCTAAATGCT
CTTTGGTGGATACGGTATGATGGCCGTTTATTCGCTTCAGTAAGTAACTTTGCATGACCCATTC
TTTCCAAATGCAGACTTTCCGGACAACCTTGAGATTCATGAGATTTTGGGCAAAACGCCGTGGA
GTCTACTCAAATGTATGACCTGGACTTTTGTCTGTTCATGCAATATTACATTCCATGTGTATCT
GATCAACAGTTGTTCGCATATTTATTATTTGTGGGCTCGTGGCCTATGCATAGACATAATGTGT
GCGTATGTGCGTGTGCGTGTGGATTTTTTTTTGTTTTACATGTTTTCTTAACGAAAGTTAGTGT
CTCTTTCCAGGTTATAGGGTTTCTTGGTGGTATAAACTGGGCACTTCTTGTTGCTCGTATATGT
CAACTATACCCAAATGCATCACCAAGCATGTTGATATCTCGTTTTTTCAAAGTCTACAGCAAGT
GGAAGTGGCCTAATCCTGTTATGCTTTGCCATATTGAAGAGGGTTCTCTTGGTCTTCTTGTGTG
GGACCCAAGGAGAAATTTTAGAGACAGGGGTCATCATATGCCTATAATTACACCTGCTTATCCT
AGTATGAATTCTAGCTATAATGTATCTATCAGTACTAGGCATGTGATGGTCCAAGAATTCACAC
GAGCTTCTGATATCTGTCAGGTACATCTCATTGCAGAGTTGTTTTTATTTTAGTAGTAAACATG
AATTGCTGCTAACTGGTAGAGGAGCCTTACTGCTGGTCAATCATTTTGATCTGTTGGATAACCC
AAGGTGCAAAATAGCATAAATTTTTTTTCTGATGCATCAGTCCTAAATTCATAATTCTGAAAGG
CAAACTGACAAGTCTAAGATACAGTGCCCGCTACTTTATATAATGAGAGCATTTGACCATGTTT
CTAAAAGAAAAAAACACGAAGCATCTGAAATACTTATGGTCAAGAAAACATGGTTTTCAAAATG
CATCTTTGACAACTAATTTCTCCTACGAATATTTGTAAAACCTGACAAATCTGTGATACTTGGA
AGCTATTTGAGAAAAATCTAGACACGATTTTCATGAATCAAATCTAAATATTTAAAAACATATT
GATGTTCAAAGTTTTAAAAGTTTGAGTCAGATGTCTGAAACAACATGTTTTCTTGGCCAGAGAG
AGTACTTGTCGGAGGATTCATACATTTTCTAAATGTTGTGATATATTTGCAGCAAACAGTACTT
TTTTAAATGATCATCGCTGCAAATAAATTTCATGTTTGCATTTAATGTCTGTTTGATTACTTAT
TGTAGGCAATAGACGAAAGGAAAGCAGACTGGGATGCTTTGTTTGAGCCATATCCATTTTTTGA
ATCGTATAGAAATTATCTAAAGATTGAGATCACAGCAAGAAATGAAGATGACCTCAGGAATTGG
AAAGGTTGGGTAGAATCCCGGCTTCGTACGCTTGTATTAAAGGTGATGTACTGAAACATTTCTT
TCTTTTAAGAAATTAGCTGTATTGTAATGTACCTTTATTTGCTTTTATTCAGATTGAACGATTT
ACACGTGAGATGCTCCTCTCACATCCTAATCCTAGAGATTTCATCGACAGCTCCAGGCCATTGC
ATTGTTTTTACTTTATGGGTCTCTGGAAAAAACAAATCAGCCAAGCTCAAGAAGCTGAGCAGTA
TGACATTAGAGCAATTGTGAATGAATTTAAAAGCAATATCCATGCATATCAACACTGGAGAGAA
GGAATGGAAATTGAAGTTTCCCATGTAAAAAGAAAAGATATCCCATCATTTGTTTTTCCTGGTG
GAATCCGTCCTTCTCGCCCATCAAGAACAGTTGGCAAGGAAGCTCGGGCTGTTTCAAGAAGTAA
TATTTCAGCTAATGTTCAAGAAAGAAATGTTCCAAGCATGGCCCAGCCTATGCCATATAAGAGT
AGTGAAGTAAACAAAATTCCGTCAGATCCTCATGGTGGCTATCAGTCGCAAGAAAGAAATAATG
CAGTGGTCTCTAGTTTGCCCTGTGAAGAAACTGGCCATATGTTCAATGGGTATGCAAATCTCCA
TACAGAATCTGTTGAGCTGGAACACTTGAGAAGCTACAAGGGAAGTACATCTGTTCCTGAGAAC
CATGTTGTGCATGATTTAGTCAAGCCACCAGAGAGCATGCCACCTAACTCAATCCATGTTTATC
CAAGTCCAACAAATGGATTGGGCCATCTTTTAGATAGTTCTTGTAAAAAACCAGCAGACATCAT
TGTAAATAAAACCACAAATTTCTCTTCAGCTGTCCTAGCAGTACCTGATGAACTTGATGAGCTG
GATTCTCATCAAGTGAAGGTAAATCAGAAAGATTTAACTGCAGTAGATCAAGGATTATCTTTGG
AGCATAAAGTTGGAAGTAATGGGGGCAAAGCAGGAACCACAGGTTCACCTGACAACAATCATCT
GAAGCGTAAAGCTGAGGAAGAGCTTGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 13160829-13163895(-)
13160947-13163937(+)
Potential amino acid sequence MPWTHTKRINICTGAMNLKLFLSFTLQMIVVR*(-)
MLVDMPEVTELHPVPDAHVPVLKFKLNGVSIDLLYANLTHVVIPEDLDLSHDSILHNVDEQTVR
SLNGCRVTDKILRLVPNILTFRTTLRFMRFWAKRRGVYSNVIGFLGGINWALLVARICQLYPNA
SPSMLISRFFKVYSKWKWPNPVMLCHIEEGSLGLLVWDPRRNFRDRGHHMPIITPAYPSMNSSY
NVSISTRHVMVQEFTRASDICQAIDERKADWDALFEPYPFFESYRNYLKIEITARNEDDLRNWK
GWVESRLRTLVLKIERFTREMLLSHPNPRDFIDSSRPLHCFYFMGLWKKQISQAQEAEQYDIRA
IVNEFKSNIHAYQHWREGMEIEVSHVKRKDIPSFVFPGGIRPSRPSRTVGKEARAVSRSNISAN
VQERNVPSMAQPMPYKSSEVNKIPSDPHGGYQSQERNNAVVSSLPCEETGHMFNGYANLHTESV
ELEHLRSYKGSTSVPENHVVHDLVKPPESMPPNSIHVYPSPTNGLGHLLDSSCKKPADIIVNKT
TNFSSAVLAVPDELDELDSHQVKVNQKDLTAVDQGLSLEHKVGSNGGKAGTTGSPDNNHLKRKA
EEELEVHGPGADIDTLCVGPRHATRTEYFFQALYDMLVDMPEVTELHPVPDAHVPVLKFKLNGV
SIDLLYANLTHVVIPEDLDLSHDSILHNVDEQTVRSLNGCRVTDKILRLVPNILTFRTTLRFMR
FWAKRRGVYSNVIGFLGGINWALLVARICQLYPNASPSMLISRFFKVYSKWKWPNPVMLCHIEE
GSLGLLVWDPRRNFRDRGHHMPIITPAYPSMNSSYNVSISTRHVMVQEFTRASDICQAIDERKA
DWDALFEPYPFFESYRNYLKIEITARNEDDLRNWKGWVESRLRTLVLKIERFTREMLLSHPNPR
DFIDSSRPLHCFYFMGLWKKQISQAQEAEQYDIRAIVNEFKSNIHAYQHWREGMEIEVSHVKRK
DIPSFVFPGGIRPSRPSRTVGKEARAVSRSNISANVQERNVPSMAQPMPYKSSEVNKIPSDPHG
GYQSQERNNAVVSSLPCEETGHMFNGYANLHTESVELEHLRSYKGSTSVPENHVVHDLVKPPES
MPPNSIHVYPSPTNGLGHLLDSSCKKPADIIVNKTTNFSSAVLAVPDELDELDSHQVKVNQKDL
TAVDQGLSLEHKVGSNGGKAGTTGSPDNNHLKRKAEEELEVHGPGADIDTLCVGPRHATRTEYF
FQALYDMLVDMPEVTELHPVPDAHVPVLKFKLNGVSIDLLYANLTHVVIPEDLDLSHDSILHNV
DEQTVRSLNGCRVTDKILRLVPNILTFRTTLRFMRFWAKRRGVYSNVIGFLGGINWALLVARIC
QLYPNASPSMLISRFFKVYSKWKWPNPVMLCHIEEGSLGLLVWDPRRNFRDRGHHMPIITPAYP
SMNSSYNVSISTRHVMVQEFTRASDICQAIDERKADWDALFEPYPFFESYRNYLKIEITARNED
DLRNWKGWVESRLRTLVLKIERFTREMLLSHPNPRDFIDSSRPLHCFYFMGLWKKQISQAQEAE
QYDIRAIVNEFKSNIHAYQHWREGMEIEVSHVKRKDIPSFVFPGGIRPSRPSRTVGKEARAVSR
SNISANVQERNVPSMAQPMPYKSSEVNKIPSDPHGGYQSQERNNAVVSSLPCEETGHMFNGYAN
LHTESVELEHLRSYKGSTSVPENHVVHDLVKPPESMPPNSIHVYPSPTNGLGHLLDSSCKKPAD
IIVNKTTNFSSAVLAVPDELDELDSHQVKVNQKDLTAVDQGLSLEHKVGSNGGKAGTTGSPDNN
HLKRKAEEELEVHGPGADIDTLCVGPRHATRTEYFFQALYDMLVDMPEVTELHPVPDAHVPVLK
FKLNGVSIDLLYANLTHVVIPEDLDLSHDSILHNVDEQTVRSLNGCRVTDKILRLVPNILTFRT
TLRFMRFWAKRRGVYSNVIGFLGGINWALLVARICQLYPNASPSMLISRFFKVYSKWKWPNPVM
LCHIEEGSLGLLVWDPRRNFRDRGHHMPIITPAYPSMNSSYNVSISTRHVMVQEFTRASDICQA
IDERKADWDALFEPYPFFESYRNYLKIEITARNEDDLRNWKGWVESRLRTLVLKIERFTREMLL
SHPNPRDFIDSSRPLHCFYFMGLWKKQISQAQEAEQYDIRAIVNEFKSNIHAYQHWREGMEIEV
SHVKRKDIPSFVFPGGIRPSRPSRTVGKEARAVSRSNISANVQERNVPSMAQPMPYKSSEVNKI
PSDPHGGYQSQERNNAVVSSLPCEETGHMFNGYANLHTESVELEHLRSYKGSTSVPENHVVHDL
VKPPESMPPNSIHVYPSPTNGLGHLLDSSCKKPADIIVNKTTNFSSAVLAVPDELDELDSHQVK
VNQKDLTAVDQGLSLEHKVGSNGGKAGTTGSPDNNHLKRKAEEELE(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021