Detail information of BGIOSGA022796_circ_g.2


General Information
CircRNA Name BGIOSGA022796_circ_g.2
ID in PlantcircBase osi_circ_006688
Alias 6:13161319|13163940
Organism Oryza sativa ssp. indica
Position chr6: 13161319-13163940  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA022796
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA022796_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA022796-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCTTTGGAGCATAAAGTTGGAAGTAATGGGGGCAAAGCAGGAACCACAGGTTCACCTGACAAC
AATCATCTGAAGCGTAAAGCTGAGGAAGAGCTTGAGgacctggatctttcgcatgactctatat
tgcacaacgttgacgaacaaactgtccgaagtcttaatggatgccgagttactgataaaattct
acgattgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GACCTGGATCTTTCGCATGACTCTATATTGCACAACGTTGACGAACAAACTGTCCGAAGTCTTA
ATGGATGCCGAGTTACTGATAAAATTCTACGATTGGTTCCAAATATTCTGGTTTGCACCTCCTG
CATTGTCTATTTTTCAGATGATATGCTAAATGCTCTTTGGTGGATACGGTATGATGGCCGTTTA
TTCGCTTCAGTAAGTAACTTTGCATGACCCATTCTTTCCAAATGCAGACTTTCCGGACAACCTT
GAGATTCATGAGATTTTGGGCAAAACGCCGTGGAGTCTACTCAAATGTATGACCTGGACTTTTG
TCTGTTCATGCAATATTACATTCCATGTGTATCTGATCAACAGTTGTTCGCATATTTATTATTT
GTGGGCTCGTGGCCTATGCATAGACATAATGTGTGCGTATGTGCGTGTGCGTGTGGATTTTTTT
TTGTTTTACATGTTTTCTTAACGAAAGTTAGTGTCTCTTTCCAGGTTATAGGGTTTCTTGGTGG
TATAAACTGGGCACTTCTTGTTGCTCGTATATGTCAACTATACCCAAATGCATCACCAAGCATG
TTGATATCTCGTTTTTTCAAAGTCTACAGCAAGTGGAAGTGGCCTAATCCTGTTATGCTTTGCC
ATATTGAAGAGGGTTCTCTTGGTCTTCTTGTGTGGGACCCAAGGAGAAATTTTAGAGACAGGGG
TCATCATATGCCTATAATTACACCTGCTTATCCTAGTATGAATTCTAGCTATAATGTATCTATC
AGTACTAGGCATGTGATGGTCCAAGAATTCACACGAGCTTCTGATATCTGTCAGGTACATCTCA
TTGCAGAGTTGTTTTTATTTTAGTAGTAAACATGAATTGCTGCTAACTGGTAGAGGAGCCTTAC
TGCTGGTCAATCATTTTGATCTGTTGGATAACCCAAGGTGCAAAATAGCATAAATTTTTTTTCT
GATGCATCAGTCCTAAATTCATAATTCTGAAAGGCAAACTGACAAGTCTAAGATACAGTGCCCG
CTACTTTATATAATGAGAGCATTTGACCATGTTTCTAAAAGAAAAAAACACGAAGCATCTGAAA
TACTTATGGTCAAGAAAACATGGTTTTCAAAATGCATCTTTGACAACTAATTTCTCCTACGAAT
ATTTGTAAAACCTGACAAATCTGTGATACTTGGAAGCTATTTGAGAAAAATCTAGACACGATTT
TCATGAATCAAATCTAAATATTTAAAAACATATTGATGTTCAAAGTTTTAAAAGTTTGAGTCAG
ATGTCTGAAACAACATGTTTTCTTGGCCAGAGAGAGTACTTGTCGGAGGATTCATACATTTTCT
AAATGTTGTGATATATTTGCAGCAAACAGTACTTTTTTAAATGATCATCGCTGCAAATAAATTT
CATGTTTGCATTTAATGTCTGTTTGATTACTTATTGTAGGCAATAGACGAAAGGAAAGCAGACT
GGGATGCTTTGTTTGAGCCATATCCATTTTTTGAATCGTATAGAAATTATCTAAAGATTGAGAT
CACAGCAAGAAATGAAGATGACCTCAGGAATTGGAAAGGTTGGGTAGAATCCCGGCTTCGTACG
CTTGTATTAAAGGTGATGTACTGAAACATTTCTTTCTTTTAAGAAATTAGCTGTATTGTAATGT
ACCTTTATTTGCTTTTATTCAGATTGAACGATTTACACGTGAGATGCTCCTCTCACATCCTAAT
CCTAGAGATTTCATCGACAGCTCCAGGCCATTGCATTGTTTTTACTTTATGGGTCTCTGGAAAA
AACAAATCAGCCAAGCTCAAGAAGCTGAGCAGTATGACATTAGAGCAATTGTGAATGAATTTAA
AAGCAATATCCATGCATATCAACACTGGAGAGAAGGAATGGAAATTGAAGTTTCCCATGTAAAA
AGAAAAGATATCCCATCATTTGTTTTTCCTGGTGGAATCCGTCCTTCTCGCCCATCAAGAACAG
TTGGCAAGGAAGCTCGGGCTGTTTCAAGAAGTAATATTTCAGCTAATGTTCAAGAAAGAAATGT
TCCAAGCATGGCCCAGCCTATGCCATATAAGAGTAGTGAAGTAAACAAAATTCCGTCAGATCCT
CATGGTGGCTATCAGTCGCAAGAAAGAAATAATGCAGTGGTCTCTAGTTTGCCCTGTGAAGAAA
CTGGCCATATGTTCAATGGGTATGCAAATCTCCATACAGAATCTGTTGAGCTGGAACACTTGAG
AAGCTACAAGGGAAGTACATCTGTTCCTGAGAACCATGTTGTGCATGATTTAGTCAAGCCACCA
GAGAGCATGCCACCTAACTCAATCCATGTTTATCCAAGTCCAACAAATGGATTGGGCCATCTTT
TAGATAGTTCTTGTAAAAAACCAGCAGACATCATTGTAAATAAAACCACAAATTTCTCTTCAGC
TGTCCTAGCAGTACCTGATGAACTTGATGAGCTGGATTCTCATCAAGTGAAGGTAAATCAGAAA
GATTTAACTGCAGTAGATCAAGGATTATCTTTGGAGCATAAAGTTGGAAGTAATGGGGGCAAAG
CAGGAACCACAGGTTCACCTGACAACAATCATCTGAAGCGTAAAGCTGAGGAAGAGCTTGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 13161338-13163895(-)
13161585-13163909(-)
13161583-13163937(+)
Potential amino acid sequence MRKIQVLKLFLSFTLQMIVVR*(-)
MNLKVVRKVRIFGTNRRILSVTRHPLRLRTVCSSTLCNIESCERSRSSSSSSALRFR*(-)
MRFWAKRRGVYSNVIGFLGGINWALLVARICQLYPNASPSMLISRFFKVYSKWKWPNPVMLCHI
EEGSLGLLVWDPRRNFRDRGHHMPIITPAYPSMNSSYNVSISTRHVMVQEFTRASDICQAIDER
KADWDALFEPYPFFESYRNYLKIEITARNEDDLRNWKGWVESRLRTLVLKIERFTREMLLSHPN
PRDFIDSSRPLHCFYFMGLWKKQISQAQEAEQYDIRAIVNEFKSNIHAYQHWREGMEIEVSHVK
RKDIPSFVFPGGIRPSRPSRTVGKEARAVSRSNISANVQERNVPSMAQPMPYKSSEVNKIPSDP
HGGYQSQERNNAVVSSLPCEETGHMFNGYANLHTESVELEHLRSYKGSTSVPENHVVHDLVKPP
ESMPPNSIHVYPSPTNGLGHLLDSSCKKPADIIVNKTTNFSSAVLAVPDELDELDSHQVKVNQK
DLTAVDQGLSLEHKVGSNGGKAGTTGSPDNNHLKRKAEEELEDLDLSHDSILHNVDEQTVRSLN
GCRVTDKILRLVPNILTFRTTLRFMRFWAKRRGVYSNVIGFLGGINWALLVARICQLYPNASPS
MLISRFFKVYSKWKWPNPVMLCHIEEGSLGLLVWDPRRNFRDRGHHMPIITPAYPSMNSSYNVS
ISTRHVMVQEFTRASDICQAIDERKADWDALFEPYPFFESYRNYLKIEITARNEDDLRNWKGWV
ESRLRTLVLKIERFTREMLLSHPNPRDFIDSSRPLHCFYFMGLWKKQISQAQEAEQYDIRAIVN
EFKSNIHAYQHWREGMEIEVSHVKRKDIPSFVFPGGIRPSRPSRTVGKEARAVSRSNISANVQE
RNVPSMAQPMPYKSSEVNKIPSDPHGGYQSQERNNAVVSSLPCEETGHMFNGYANLHTESVELE
HLRSYKGSTSVPENHVVHDLVKPPESMPPNSIHVYPSPTNGLGHLLDSSCKKPADIIVNKTTNF
SSAVLAVPDELDELDSHQVKVNQKDLTAVDQGLSLEHKVGSNGGKAGTTGSPDNNHLKRKAEEE
LEDLDLSHDSILHNVDEQTVRSLNGCRVTDKILRLVPNILTFRTTLRFMRFWAKRRGVYSNVIG
FLGGINWALLVARICQLYPNASPSMLISRFFKVYSKWKWPNPVMLCHIEEGSLGLLVWDPRRNF
RDRGHHMPIITPAYPSMNSSYNVSISTRHVMVQEFTRASDICQAIDERKADWDALFEPYPFFES
YRNYLKIEITARNEDDLRNWKGWVESRLRTLVLKIERFTREMLLSHPNPRDFIDSSRPLHCFYF
MGLWKKQISQAQEAEQYDIRAIVNEFKSNIHAYQHWREGMEIEVSHVKRKDIPSFVFPGGIRPS
RPSRTVGKEARAVSRSNISANVQERNVPSMAQPMPYKSSEVNKIPSDPHGGYQSQERNNAVVSS
LPCEETGHMFNGYANLHTESVELEHLRSYKGSTSVPENHVVHDLVKPPESMPPNSIHVYPSPTN
GLGHLLDSSCKKPADIIVNKTTNFSSAVLAVPDELDELDSHQVKVNQKDLTAVDQGLSLEHKVG
SNGGKAGTTGSPDNNHLKRKAEEELEDLDLSHDSILHNVDEQTVRSLNGCRVTDKILRLVPNIL
TFRTTLRFMRFWAKRRGVYSNVIGFLGGINWALLVARICQLYPNASPSMLISRFFKVYSKWKWP
NPVMLCHIEEGSLGLLVWDPRRNFRDRGHHMPIITPAYPSMNSSYNVSISTRHVMVQEFTRASD
ICQAIDERKADWDALFEPYPFFESYRNYLKIEITARNEDDLRNWKGWVESRLRTLVLKIERFTR
EMLLSHPNPRDFIDSSRPLHCFYFMGLWKKQISQAQEAEQYDIRAIVNEFKSNIHAYQHWREGM
EIEVSHVKRKDIPSFVFPGGIRPSRPSRTVGKEARAVSRSNISANVQERNVPSMAQPMPYKSSE
VNKIPSDPHGGYQSQERNNAVVSSLPCEETGHMFNGYANLHTESVELEHLRSYKGSTSVPENHV
VHDLVKPPESMPPNSIHVYPSPTNGLGHLLDSSCKKPADIIVNKTTNFSSAVLAVPDELDELDS
HQVKVNQKDLTAVDQGLSLEHKVGSNGGKAGTTGSPDNNHLKRKAEEELE(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021