Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | BGIOSGA022796_circ_g.2 |
| ID in PlantcircBase | osi_circ_006688 |
| Alias | 6:13161319|13163940 |
| Organism | Oryza sativa ssp. indica |
| Position | chr6: 13161319-13163940 JBrowse» |
| Reference genome | Oryza_indica.ASM465v1.42 |
| Type | e-circRNA |
| Identification method | find_circ |
| Parent gene | BGIOSGA022796 |
| Parent gene annotation | NA |
| Parent gene strand | + |
| Alternative splicing | BGIOSGA022796_circ_g.1 |
| Support reads | NA |
| Tissues | leaf |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | BGIOSGA022796-TA:5 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
13161338-13163895(-) 13161585-13163909(-) 13161583-13163937(+) |
| Potential amino acid sequence |
MRKIQVLKLFLSFTLQMIVVR*(-) MNLKVVRKVRIFGTNRRILSVTRHPLRLRTVCSSTLCNIESCERSRSSSSSSALRFR*(-) MRFWAKRRGVYSNVIGFLGGINWALLVARICQLYPNASPSMLISRFFKVYSKWKWPNPVMLCHI EEGSLGLLVWDPRRNFRDRGHHMPIITPAYPSMNSSYNVSISTRHVMVQEFTRASDICQAIDER KADWDALFEPYPFFESYRNYLKIEITARNEDDLRNWKGWVESRLRTLVLKIERFTREMLLSHPN PRDFIDSSRPLHCFYFMGLWKKQISQAQEAEQYDIRAIVNEFKSNIHAYQHWREGMEIEVSHVK RKDIPSFVFPGGIRPSRPSRTVGKEARAVSRSNISANVQERNVPSMAQPMPYKSSEVNKIPSDP HGGYQSQERNNAVVSSLPCEETGHMFNGYANLHTESVELEHLRSYKGSTSVPENHVVHDLVKPP ESMPPNSIHVYPSPTNGLGHLLDSSCKKPADIIVNKTTNFSSAVLAVPDELDELDSHQVKVNQK DLTAVDQGLSLEHKVGSNGGKAGTTGSPDNNHLKRKAEEELEDLDLSHDSILHNVDEQTVRSLN GCRVTDKILRLVPNILTFRTTLRFMRFWAKRRGVYSNVIGFLGGINWALLVARICQLYPNASPS MLISRFFKVYSKWKWPNPVMLCHIEEGSLGLLVWDPRRNFRDRGHHMPIITPAYPSMNSSYNVS ISTRHVMVQEFTRASDICQAIDERKADWDALFEPYPFFESYRNYLKIEITARNEDDLRNWKGWV ESRLRTLVLKIERFTREMLLSHPNPRDFIDSSRPLHCFYFMGLWKKQISQAQEAEQYDIRAIVN EFKSNIHAYQHWREGMEIEVSHVKRKDIPSFVFPGGIRPSRPSRTVGKEARAVSRSNISANVQE RNVPSMAQPMPYKSSEVNKIPSDPHGGYQSQERNNAVVSSLPCEETGHMFNGYANLHTESVELE HLRSYKGSTSVPENHVVHDLVKPPESMPPNSIHVYPSPTNGLGHLLDSSCKKPADIIVNKTTNF SSAVLAVPDELDELDSHQVKVNQKDLTAVDQGLSLEHKVGSNGGKAGTTGSPDNNHLKRKAEEE LEDLDLSHDSILHNVDEQTVRSLNGCRVTDKILRLVPNILTFRTTLRFMRFWAKRRGVYSNVIG FLGGINWALLVARICQLYPNASPSMLISRFFKVYSKWKWPNPVMLCHIEEGSLGLLVWDPRRNF RDRGHHMPIITPAYPSMNSSYNVSISTRHVMVQEFTRASDICQAIDERKADWDALFEPYPFFES YRNYLKIEITARNEDDLRNWKGWVESRLRTLVLKIERFTREMLLSHPNPRDFIDSSRPLHCFYF MGLWKKQISQAQEAEQYDIRAIVNEFKSNIHAYQHWREGMEIEVSHVKRKDIPSFVFPGGIRPS RPSRTVGKEARAVSRSNISANVQERNVPSMAQPMPYKSSEVNKIPSDPHGGYQSQERNNAVVSS LPCEETGHMFNGYANLHTESVELEHLRSYKGSTSVPENHVVHDLVKPPESMPPNSIHVYPSPTN GLGHLLDSSCKKPADIIVNKTTNFSSAVLAVPDELDELDSHQVKVNQKDLTAVDQGLSLEHKVG SNGGKAGTTGSPDNNHLKRKAEEELEDLDLSHDSILHNVDEQTVRSLNGCRVTDKILRLVPNIL TFRTTLRFMRFWAKRRGVYSNVIGFLGGINWALLVARICQLYPNASPSMLISRFFKVYSKWKWP NPVMLCHIEEGSLGLLVWDPRRNFRDRGHHMPIITPAYPSMNSSYNVSISTRHVMVQEFTRASD ICQAIDERKADWDALFEPYPFFESYRNYLKIEITARNEDDLRNWKGWVESRLRTLVLKIERFTR EMLLSHPNPRDFIDSSRPLHCFYFMGLWKKQISQAQEAEQYDIRAIVNEFKSNIHAYQHWREGM EIEVSHVKRKDIPSFVFPGGIRPSRPSRTVGKEARAVSRSNISANVQERNVPSMAQPMPYKSSE VNKIPSDPHGGYQSQERNNAVVSSLPCEETGHMFNGYANLHTESVELEHLRSYKGSTSVPENHV VHDLVKPPESMPPNSIHVYPSPTNGLGHLLDSSCKKPADIIVNKTTNFSSAVLAVPDELDELDS HQVKVNQKDLTAVDQGLSLEHKVGSNGGKAGTTGSPDNNHLKRKAEEELE(+) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Huang et al., 2021 |