Detail information of 5_circ_ag.16


General Information
CircRNA Name 5_circ_ag.16
ID in PlantcircBase ath_circ_039895
Alias NA
Organism Arabidpsis thaliana
Position chr5: 7609707-7614434  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI, circRNA_finder
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 5_circ_igg.12 5_circ_ag.13 5_circ_ag.14 5_circ_ag.15 AT5G22796_circ_g.1 AT5G22796_circ_g.2
Support reads 8
Tissues root, aerial, inflorescences
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCGTTTCTTCTCTTATAACTTGAAGTTATCATCTCTTTTACTTTTATGCAGGAGCCGATTTCAT
AGCCAACGAACCTTGTGAACTAAAAGAAGTTATGTGaacctataagcagtgctagaattttctg
gaagaacttcatcttagagttaaacaatacattccgccaacaatgaactgtcacttgtaagttg
tctaactc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AACCTATAAGCAGTGCTAGAATTTTCTGGAAGAACTTCATCTTAGAGTTAAACAATACATTCCG
CCAACAATGAACTGTCACTTGTAAGTTGTCTAACTCTTAAGACTCAATGAACTTTTTTTTTTTG
TTCTTCTGAAAACTACAACAATCTTTTTTGAAAACAGGCAAATTTTATGTTTGTTGTTGGTGTT
GGTGGCTGAGACAAGCTCAAGAATCATTAGAAAATGTACTCATCGATCTTTATAAGGTAAATAA
ACTCTAACTGAGACCATCCTCTCGTTTCTCTCAGTTTTTGTTATTAGATTGTAGAATTGACAAA
ATTGAATCGGAATTTTGAGCAGAAAGGTGGAAGAACAGAAGAGCAAGTTGAGCTCTTGAAGCTA
CAACTTTGGATGATATATCAAGAAGAAGCATTCAATGGAAAACCAGCAAAAATTGCGAGATCTC
ATGGCCGGAAATTTCAGGTCACGGTCGAGAAGGAAACCTCTAGGATGTTGGTAAGATTAATCTC
ACTAGTCTTTAGTTTTGATTAGATTTCTGAATTCTTTTGATCAATGAACTGATGAATTTGAATG
TGACGTTACAACAGCTGAAGCCGTGTATCGGAAACACAAGTGATAGAGCCAGATGCAAACAAGG
CTTGTAAAAAGTTGGCAAACATAAATCTGATGCATCGTTTTAAGGTTGGTTGTTATATACAAAA
TTTTGGCATAATCTTGGCTTGTTATGCGTTTGGATCTATCTATTTGATCAAAGTTCTGGTATCA
TATTACAGATTCAAGTATATTCAGAACCAGAGTCTTCTTAAAGTGGATGAGTCAGACGATGAAC
CACTTGACACAAAACAAATCAGCTCTTTGAACCTCTTTCAACAAGATTTCGATGTGGAAGGACT
TTTAATCATTTGTGAAGGCTATATCTGATGTAGATTTTGATGCCAGAAACAACAAATATTGTGA
GATCTCATGGCAATAAATTTTAAGTCACAATCGAGAAGAAACCACTAGGATCTTGGTAAGAGTA
ATCTCACTAGTCTTTAGTTTTGATCAGATTTTTGAAGTCTCTTGATCAATGAACTAATGGATTT
GAATAAATGTGGTGTTACAACAGAATTTTGGATGGGCTTATATGCAACTAAGGGACTATACAGC
AGCTAAAGACGAAGTCTTACTAAAGTTGCTACAAGGAAATGGAATAACCTTTTCAAAGCAAAGG
TTTGCTTCTAATACCTGTTTTATAAACGCAGTATTCCCAATCTTTGGTGCCTCGAAATTAAATT
TCATATTTCTGCAACTTTACCTTCTCTCAAACATACAAATGTTGAGTTCCTGCTAGTACATTAA
CTTTCTTGCGTTTCCCCAAACATACATACTAGTTGTAAGCATATATATTAAGATTCTTGTCCCT
CCTTTAGAGTCAGGTTGGCATTAGAGGTGAGGCTTCGGTTGGAGATGCTTATAACCAAATTTGG
GTTGTGAAACTTGAGGAAAAGATGAAAATCCTGAAAATACGAAAAATTTGCTTACAATGTTCGA
AGTTGGCTAGATTTCAATATTTGTGTTAACTCACATCTTCTCTTGGTTCATCTCAGATCAAGGA
ACGTAAGGAGAAAATATATGTAGCTGGTTCTAACATAAGGAGATCGCAACATTCAAATGATATT
TCATTAAAAGTACCTTTCCAATTCTGTTGACAAATGCTCTCATAGAAGTATTTGAGTGCTCAAT
CCCTGATGTTCTTGATTTATGTTTTTCATTACTAATAGGTGGAAAGTCTTTGGATGGGGACGAG
GACAATGATGGGGACTATATGAATGCGGTGTCGCATGGCCATAGCAAGGCTTCCTCGATTTTTA
AATCTAAGAAATCTAAGGCATCTCTTTGAGGTTGGTTGTTATAAAGTATACACATTTTGGCATA
ATCTTCGTTTGGATCTATCCATTCAACTTTTTGGTGACATATTACAGATCCAAGTTTATTAAAA
CCAGAGTCTTCTTGAAGTGGATTACTAAGATGATTAAGCGCTGACTTAATGGATTAATACAAAA
CAAGATTAGCTCTTTGAACAAGTGAGGTTTGCAATTGAGTTAGATGATGTGGAAGGACTTCTAA
TCATCCGTGAAGGAAATATCTAATGCAGACTTGGATGCCAGGAACAACAAAGCCAGTCGTTTCT
CTGTAAATTAATGGAGAAGGAACATTACTGGAAATACAAGGATCGAAATCTATTATCATTCTTC
ATTAACTAGATTTTAGGGCTTATATATATATATACCAAGAGTTATACTAGGTATTCTGGTTTGT
ATCTAAATATTTTACTTGTTGGTTGCAGCTGTTTAGGGTTTGAGATGTTGGCGTATCTTGCAAC
CAGCTTCTTAGAATCCACCTATGGATTCTCTGGCACAAGGATAATGGCTGAATACTGCATTTTC
CCCCGAGGATATTATTTCATTTCAACTGATTTGATGTCAAAGTTACGATACCAAATCAGATAAG
TTATAATTATCTTAACTTGTCATACCATATATACAAAGCTAGACAAGAGTTTATTTGATGTACA
TTCTTTCGTATCATTCAATTTTTAGAACCTATAAGCAGTGCCAAAAGGTTTCTAGAAGAACTTC
ATCTTGGTATAAAATAAGACGATCCGCCAACCACGAACTCCCACTTGTAAGTTGTCATTTTAAT
GTAATGTTATAGTTACTCAACAAATTATATAAGATATAATTTTCTTAAATTTTCGTGAATGAAT
ATATAGTCAGATCAATGGAACTAAGCTTGAAGAAGGTTTATTATTTTGTACACTCCGTATCAAA
CATTTTATACAAGCTAGAAGCATTGCCAGAAGATTCTAGAAGAGCTTCATCATCGAGTATTTTA
AGACGATCAGCCAGCCACGAACTTCCACCTGTAAGTTTTCATTTTATTGATCCCATGATTATTC
ATTATGCATAGGACAACTTTTTAATCGTACCAACGACTTGGTAGGTCATCTTGTATATATTTGC
ACTGATGGTACATTATTTTAAGTGTATATTGTTTTGGATTTTGCAGCTTAAAGCACTGCAATCC
GTAGCTAAGAGATGAAACATAAGAGATGTAGTTCTAGAGAAAAGCCAAAAACTGGATCAAGAAA
GAGACTTGTGGAAAAATATCAAATTTTTTGAAAAGAACTTATTGGGGTCTTTGTTTCTTGTGTT
CTTAAATCAAAAACACATTATGTCGCTTATCTCCCAGGCATCGTTTTGCTTATTTCAGGTATAT
TGCAATGACTTCGGACATAATTAATGTATATCGTTTCTTAGGTTGACTCCTTTCCCTAGTATGT
TACTCCAATGTTTTTCTACAATAATATAGTTTCTAGTAACTTAAATCTTTTTGATATTATATAG
TAATATGTGATCATGTGGGTCTCAATCTATGAAAACTAATCAAATATTGATTCAGCTTTTTTTA
CAGGTAAGTAAAGAGAAAAAGATACCGAGCATATGACATGCTTGTTCAGATTGGTCATGCATAC
GCAGATGAAAAAAACTACATAGGTACTTCAATATGTTATGTTTAGTTCAATCCTAACAAGTCAT
TGTAACATTGTTCAGGTCTTTGTTTTTCTTTCGTGCGTCAAGATTAATTGTTAGCCTCTGCTAT
AATTGTAACAGGTGGTTGGTTGCCTTGATGAAATAACCTTAAGATCATTAGTGTTGTTGTTAAG
GGCGTAGCTCGTTTGGCATCTGGTCTTATAATAGTGCTTTTAATCTGCTTCCTTCAACATTGCT
TCTCCTTCAACGGAAAAACAAGGAAATTGCAAAAATTAGTGATCTTCTTCCTTTTCAAGGGTGT
TCCTGTGAGTAAGCCATTTGTCTCACTTGTTTAATAACCAGACCCGGTGAACTGTTTTCCCTTA
TCTGAAAAACATGCCAATTTACGTTTGTTGAAGGTGCTGGGTGGCTAAAACTACGCGTTGCAGA
ACGACACAGAAACTTAAAGAACATGGTCGAAGGTTTACTGAAGTTGCCAGAAGAAAATGAATTA
CCTTTACAAAGAAAAGGTGTGCAACTAATATCTTTGGTGCCTAGAATTTAATTTCACATTTGCA
CAGCTTTTCTTTGTCTCACACATGTAGACGCAGACAATTACAAATGTTTGGCGCCTTGCTAGTA
CATAAAAATTGATTGCTTAGCCGTAAATATACATACTAGGTGTTAATATCTATATTAGGATTGT
TTCTGTGGATTGTTGTTCTTTTGAAGAGTCGTTTCAGTCTTATAGGTGATGCTTTGACTGGAGA
TGCTCATCAAGAAATATGACATGAAGGATTTCAAGTCTGTGAAGCCTAAGGAACATATAAAACT
CCTAAAAACACAAAAGGTTTGTTTACGATATTCAAAGTTGTCTAGATTTCAATGTTATGCCTTG
CATATTCTCTTGGTATCAATGCACTTATGGAGAAGAATATGCAGCTCCCTCTGACGTAAGTAGA
TCACAACATTGAAAATAAACTTCATGAGTGCTCGAGTATTGATGTTCGTGGAGGCGTTGTTTTA
GAACTCTAGAGTTACCTTCTAGTTTCTTAAGTTCTCAATCATTTTCCCAGGTATGTCTTTAATA
TTTTTCTACTGCGTAGTATCTCGTTTCTTCTCTTATAACTTGAAGTTATCATCTCTTTTACTTT
TATGCAGGAGCCGATTTCATAGCCAACGAACCTTGTGAACTAAAAGAAGTTATGTG
Conservation Information
Conserved circRNAs NA
PMCS 0.146872137
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017