Detail information of 5_circ_ag.14


General Information
CircRNA Name 5_circ_ag.14
ID in PlantcircBase ath_circ_039893
Alias 5:7609581-7614434
Organism Arabidpsis thaliana
Position chr5: 7609581-7614434  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method find_circ; CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 5_circ_igg.12 5_circ_ag.13 5_circ_ag.15 5_circ_ag.16 AT5G22796_circ_g.1 AT5G22796_circ_g.2
Support reads 2/1/3/3/2/1/1
Tissues seedling;root;flower
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCGTTTCTTCTCTTATAACTTGAAGTTATCATCTCTTTTACTTTTATGCAGGAGCCGATTTCAT
AGCCAACGAACCTTGTGAACTAAAAGAAGTTATGTGttctaggactattcaaagtccttcagag
caaccaatcagctaagttataaatgtcttaatttgacagaccaaatgaactaagctacacaaag
tttatttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTCTAGGACTATTCAAAGTCCTTCAGAGCAACCAATCAGCTAAGTTATAAATGTCTTAATTTGA
CAGACCAAATGAACTAAGCTACACAAAGTTTATTTGATTATTTCTTATCATTCAATTTATAGAA
CCTATAAGCAGTGCTAGAATTTTCTGGAAGAACTTCATCTTAGAGTTAAACAATACATTCCGCC
AACAATGAACTGTCACTTGTAAGTTGTCTAACTCTTAAGACTCAATGAACTTTTTTTTTTTGTT
CTTCTGAAAACTACAACAATCTTTTTTGAAAACAGGCAAATTTTATGTTTGTTGTTGGTGTTGG
TGGCTGAGACAAGCTCAAGAATCATTAGAAAATGTACTCATCGATCTTTATAAGGTAAATAAAC
TCTAACTGAGACCATCCTCTCGTTTCTCTCAGTTTTTGTTATTAGATTGTAGAATTGACAAAAT
TGAATCGGAATTTTGAGCAGAAAGGTGGAAGAACAGAAGAGCAAGTTGAGCTCTTGAAGCTACA
ACTTTGGATGATATATCAAGAAGAAGCATTCAATGGAAAACCAGCAAAAATTGCGAGATCTCAT
GGCCGGAAATTTCAGGTCACGGTCGAGAAGGAAACCTCTAGGATGTTGGTAAGATTAATCTCAC
TAGTCTTTAGTTTTGATTAGATTTCTGAATTCTTTTGATCAATGAACTGATGAATTTGAATGTG
ACGTTACAACAGCTGAAGCCGTGTATCGGAAACACAAGTGATAGAGCCAGATGCAAACAAGGCT
TGTAAAAAGTTGGCAAACATAAATCTGATGCATCGTTTTAAGGTTGGTTGTTATATACAAAATT
TTGGCATAATCTTGGCTTGTTATGCGTTTGGATCTATCTATTTGATCAAAGTTCTGGTATCATA
TTACAGATTCAAGTATATTCAGAACCAGAGTCTTCTTAAAGTGGATGAGTCAGACGATGAACCA
CTTGACACAAAACAAATCAGCTCTTTGAACCTCTTTCAACAAGATTTCGATGTGGAAGGACTTT
TAATCATTTGTGAAGGCTATATCTGATGTAGATTTTGATGCCAGAAACAACAAATATTGTGAGA
TCTCATGGCAATAAATTTTAAGTCACAATCGAGAAGAAACCACTAGGATCTTGGTAAGAGTAAT
CTCACTAGTCTTTAGTTTTGATCAGATTTTTGAAGTCTCTTGATCAATGAACTAATGGATTTGA
ATAAATGTGGTGTTACAACAGAATTTTGGATGGGCTTATATGCAACTAAGGGACTATACAGCAG
CTAAAGACGAAGTCTTACTAAAGTTGCTACAAGGAAATGGAATAACCTTTTCAAAGCAAAGGTT
TGCTTCTAATACCTGTTTTATAAACGCAGTATTCCCAATCTTTGGTGCCTCGAAATTAAATTTC
ATATTTCTGCAACTTTACCTTCTCTCAAACATACAAATGTTGAGTTCCTGCTAGTACATTAACT
TTCTTGCGTTTCCCCAAACATACATACTAGTTGTAAGCATATATATTAAGATTCTTGTCCCTCC
TTTAGAGTCAGGTTGGCATTAGAGGTGAGGCTTCGGTTGGAGATGCTTATAACCAAATTTGGGT
TGTGAAACTTGAGGAAAAGATGAAAATCCTGAAAATACGAAAAATTTGCTTACAATGTTCGAAG
TTGGCTAGATTTCAATATTTGTGTTAACTCACATCTTCTCTTGGTTCATCTCAGATCAAGGAAC
GTAAGGAGAAAATATATGTAGCTGGTTCTAACATAAGGAGATCGCAACATTCAAATGATATTTC
ATTAAAAGTACCTTTCCAATTCTGTTGACAAATGCTCTCATAGAAGTATTTGAGTGCTCAATCC
CTGATGTTCTTGATTTATGTTTTTCATTACTAATAGGTGGAAAGTCTTTGGATGGGGACGAGGA
CAATGATGGGGACTATATGAATGCGGTGTCGCATGGCCATAGCAAGGCTTCCTCGATTTTTAAA
TCTAAGAAATCTAAGGCATCTCTTTGAGGTTGGTTGTTATAAAGTATACACATTTTGGCATAAT
CTTCGTTTGGATCTATCCATTCAACTTTTTGGTGACATATTACAGATCCAAGTTTATTAAAACC
AGAGTCTTCTTGAAGTGGATTACTAAGATGATTAAGCGCTGACTTAATGGATTAATACAAAACA
AGATTAGCTCTTTGAACAAGTGAGGTTTGCAATTGAGTTAGATGATGTGGAAGGACTTCTAATC
ATCCGTGAAGGAAATATCTAATGCAGACTTGGATGCCAGGAACAACAAAGCCAGTCGTTTCTCT
GTAAATTAATGGAGAAGGAACATTACTGGAAATACAAGGATCGAAATCTATTATCATTCTTCAT
TAACTAGATTTTAGGGCTTATATATATATATACCAAGAGTTATACTAGGTATTCTGGTTTGTAT
CTAAATATTTTACTTGTTGGTTGCAGCTGTTTAGGGTTTGAGATGTTGGCGTATCTTGCAACCA
GCTTCTTAGAATCCACCTATGGATTCTCTGGCACAAGGATAATGGCTGAATACTGCATTTTCCC
CCGAGGATATTATTTCATTTCAACTGATTTGATGTCAAAGTTACGATACCAAATCAGATAAGTT
ATAATTATCTTAACTTGTCATACCATATATACAAAGCTAGACAAGAGTTTATTTGATGTACATT
CTTTCGTATCATTCAATTTTTAGAACCTATAAGCAGTGCCAAAAGGTTTCTAGAAGAACTTCAT
CTTGGTATAAAATAAGACGATCCGCCAACCACGAACTCCCACTTGTAAGTTGTCATTTTAATGT
AATGTTATAGTTACTCAACAAATTATATAAGATATAATTTTCTTAAATTTTCGTGAATGAATAT
ATAGTCAGATCAATGGAACTAAGCTTGAAGAAGGTTTATTATTTTGTACACTCCGTATCAAACA
TTTTATACAAGCTAGAAGCATTGCCAGAAGATTCTAGAAGAGCTTCATCATCGAGTATTTTAAG
ACGATCAGCCAGCCACGAACTTCCACCTGTAAGTTTTCATTTTATTGATCCCATGATTATTCAT
TATGCATAGGACAACTTTTTAATCGTACCAACGACTTGGTAGGTCATCTTGTATATATTTGCAC
TGATGGTACATTATTTTAAGTGTATATTGTTTTGGATTTTGCAGCTTAAAGCACTGCAATCCGT
AGCTAAGAGATGAAACATAAGAGATGTAGTTCTAGAGAAAAGCCAAAAACTGGATCAAGAAAGA
GACTTGTGGAAAAATATCAAATTTTTTGAAAAGAACTTATTGGGGTCTTTGTTTCTTGTGTTCT
TAAATCAAAAACACATTATGTCGCTTATCTCCCAGGCATCGTTTTGCTTATTTCAGGTATATTG
CAATGACTTCGGACATAATTAATGTATATCGTTTCTTAGGTTGACTCCTTTCCCTAGTATGTTA
CTCCAATGTTTTTCTACAATAATATAGTTTCTAGTAACTTAAATCTTTTTGATATTATATAGTA
ATATGTGATCATGTGGGTCTCAATCTATGAAAACTAATCAAATATTGATTCAGCTTTTTTTACA
GGTAAGTAAAGAGAAAAAGATACCGAGCATATGACATGCTTGTTCAGATTGGTCATGCATACGC
AGATGAAAAAAACTACATAGGTACTTCAATATGTTATGTTTAGTTCAATCCTAACAAGTCATTG
TAACATTGTTCAGGTCTTTGTTTTTCTTTCGTGCGTCAAGATTAATTGTTAGCCTCTGCTATAA
TTGTAACAGGTGGTTGGTTGCCTTGATGAAATAACCTTAAGATCATTAGTGTTGTTGTTAAGGG
CGTAGCTCGTTTGGCATCTGGTCTTATAATAGTGCTTTTAATCTGCTTCCTTCAACATTGCTTC
TCCTTCAACGGAAAAACAAGGAAATTGCAAAAATTAGTGATCTTCTTCCTTTTCAAGGGTGTTC
CTGTGAGTAAGCCATTTGTCTCACTTGTTTAATAACCAGACCCGGTGAACTGTTTTCCCTTATC
TGAAAAACATGCCAATTTACGTTTGTTGAAGGTGCTGGGTGGCTAAAACTACGCGTTGCAGAAC
GACACAGAAACTTAAAGAACATGGTCGAAGGTTTACTGAAGTTGCCAGAAGAAAATGAATTACC
TTTACAAAGAAAAGGTGTGCAACTAATATCTTTGGTGCCTAGAATTTAATTTCACATTTGCACA
GCTTTTCTTTGTCTCACACATGTAGACGCAGACAATTACAAATGTTTGGCGCCTTGCTAGTACA
TAAAAATTGATTGCTTAGCCGTAAATATACATACTAGGTGTTAATATCTATATTAGGATTGTTT
CTGTGGATTGTTGTTCTTTTGAAGAGTCGTTTCAGTCTTATAGGTGATGCTTTGACTGGAGATG
CTCATCAAGAAATATGACATGAAGGATTTCAAGTCTGTGAAGCCTAAGGAACATATAAAACTCC
TAAAAACACAAAAGGTTTGTTTACGATATTCAAAGTTGTCTAGATTTCAATGTTATGCCTTGCA
TATTCTCTTGGTATCAATGCACTTATGGAGAAGAATATGCAGCTCCCTCTGACGTAAGTAGATC
ACAACATTGAAAATAAACTTCATGAGTGCTCGAGTATTGATGTTCGTGGAGGCGTTGTTTTAGA
ACTCTAGAGTTACCTTCTAGTTTCTTAAGTTCTCAATCATTTTCCCAGGTATGTCTTTAATATT
TTTCTACTGCGTAGTATCTCGTTTCTTCTCTTATAACTTGAAGTTATCATCTCTTTTACTTTTA
TGCAGGAGCCGATTTCATAGCCAACGAACCTTGTGAACTAAAAGAAGTTATGTG
Conservation Information
Conserved circRNAs NA
PMCS 0.15034887
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020