Detail information of Solyc03g006380.2_circ_igg.1


General Information
CircRNA Name Solyc03g006380.2_circ_igg.1
ID in PlantcircBase sly_circ_000902
Alias NA
Organism Solanum lycopersicum
Position chr3: 976172-980939  JBrowse»
Reference genome SL2.50.38
Type   igg-circRNA
Identification method CIRI; find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Solyc03g006370.2_circ_ig.1 Solyc03g006380.2_circ_igg.2 Solyc03g006380.2_circ_igg.3
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCATCTGTGGGAATTTCAAGATCAACTTCACTCGCGAATGCCTCGGCAGACTCACGCATCCCC
TTCTTAACCAAGTAATCATAGATGCACTTTTCAAGCccttcttaattccatgccaagaggaaga
tcaggaaatcaagagattttgatttgattagggagtttgctgcatcccagagcaggagccagta
gaagagcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTCTTAATTCCATGCCAAGAGGAAGATCAGGAAATCAAGAGATTTTGATTTGATTAGGGAGT
TTGCTGCATCCCAGAGCAGGAGCCAGTAGAAGAGCCTGATAGGAAGAGTAGCACAGAATCCGAT
AAGAGTTTCTACTAAAATAGAGAACTGTTTAATTGTCCTTGAAGAACTAATAACAAACCAACAT
TTTCATACACCAGCAAAAAAGGTCTTATTTTGGGTCAAAAGGCATTCTCTACATAAGCGTACAA
TTAAACAGTTCTGCAATTACCAAATAACCCATGATAATACTTGATGTTGTATACATCAAATAAA
ACCTCTGATCAGACATACAAAGTTATTCGCTTCTACAATTACCAAATAATTAATCTCTTCCGGA
CATGAACGAGGCTGCAGCCTTATGGGGAAATATGATTTTCTCAAGAACCTCATCTTAATTAAGG
CTATAGATACGTTCAGTCACATATCGAGAGATCTTGTATACACCAAATAAAACCTCATCTTAGG
GGAAATCTTTCATATCCTTAAAGCTGGACATGAATGAGGCTGTAACCTAATCCATAAATACTTG
ATGTTCATGATCGGACATACAAAGTTAAACCACTACTAATTTTGTGTTGGTAAATGCAACACAC
ATACAACAATGAGCATGTTCTGCACAAGGCACTGAGAATTTTGAAAAAGTATGCAACTGCTTCC
TCCAATGAAGGAGCTTTTCTTGCAGATTTTAGTTAGAACCTTAATGCATGTTAAGTCAAAATAT
AAGAGTGGAACTACTTAGATGAGCTCACATGTATTATCAAGACCAAAATCAAGAGAATCTGAAA
CATAAATGCAAGGTATTTGAAAACAATACAAACGAACCTGCTTCAGAAGGATCTGGCACCTGAA
GCATAACCTTTTCAGGAGTATCGGCATTTGGTTCCATCTGCATAGTTTGGTCAAAGTAAATGCC
TTGTCCCTCTCCCTCATCCTGGAAGGAATAAAACCTTGACAGTTATGTCTCAACAAAAAAAAAA
TTGTTGTTGTATCAGAAATGTAAACATACTTTGGCCTCCCACAGTTGAGGCATATTTGGAATTT
GCTCCATCAGGCGGCTGCATGACACAAGAAAATCTAAAAGAGTTACAAATCTTCTGATTCACCA
ACTTCAACAACCAAATTGATGCTTTCACTATGCAACATCATAGCAATAAGTAGTTATCTAGGAA
GATTAACACACAGAATTAGATAAATTCAATTTTACGGTCATAATTACATTGCGCAAGACCAAAT
GGACACGTGATTTTGTCAAGAACAAAGCAGCACAGATATAACATGAAGTTACATGAACAAGACA
AACACTAAAAAAAATACATCAAGTGCAGAAACGTTGGTTTGGATTAGCAATAAACATAACAAGT
TATTACCTAGAATCAGTTACAAACGCCGCCCCCTGACTCGGACGATCCACATCAAGAAATCTTA
ACTTAGGTGTCACTTCGTCCTCAGGCATCCTCAGATGGTATGGCTCTTGTGATCTCTCAGGAGT
AAATGCCGGCACCACAAGAGATATATTATGTGCCTATAGTTCGGACAAAAGAGTGACATCACAA
GGGAGACATTATAATCTATATAATTAAGACCGAACGATGCATTTGTAGGAGAGCTAACTGGTGT
AACAGAATGAGAAGAAGATGCTGGCACAGCATAAGGGACTTGAGGTACCACATTGTCCATAGTA
CGTGCAGCCTGATAATTTGAAAAAAAAAATTCATTTAGATTATAATAGTCTCAAAAAGAGGATA
AAAGAAGACACTTCATCAAATATTTTTTTTTCAATTTTTTATATTTATTTACCCTTTTCTTCTA
TAGTCTTACCCATCCATTCAAACACCCAAAGTACTTTCACCACCATTAGAACACCACAAGTCAA
TCGAAACTGGGTCTTTAAGGAAGAAAGGTGAATAATTATTTGAAAGCTCGCCCAGAGATATTGG
GGCTTTGCACTTCTGAAACCTAAAAATCAAATTATAAAAGAAAAAGTGAAGGGGGCAGAGAGGA
TGAACATGGCAGAATATTGTCATTAGTGGTGGTCACCGAAGATAAGCAATCCTCTCAAGGAAGA
TGAGGATGAGCCTATGATGTCTTCCACATCATCATCGATGGCGATGACAATTCCAAGAGGAAGA
GATTGTTTCTATGACGTCTGATGAATTAACGAAATTACTAGCAAAAAAAATTGAGACATAGTTG
ATTGGTTGAGATTTGAGATTAATAGACATAGTTGATTGGTTGAGATTTGAGATTAATAATTAAA
GGATCTATTAGTAAAAAAATAATTTTTTTGGTGGGTTCAATTGGATTTGAAGTAAACAAACCCA
TACTGATTTTTCTCAAATCAGATCCAAAGTACTTTGGGGTGATATAAATATATGTTAACTTATC
TAAAATTGATTTAGGTTGATTGATTTTGCAAGAGTTGTACATGAGTTTGAAAAATTGTTTGGAT
TCAACAATGGTGAATCCGGTGAAGATGGTGGCAGTATGACTTAGAGGTGGTGAAAGATGGGAGA
TTTGTTTATATTGCTGGAGATGAAAGAAAACAAATAAGAAAAAAATTAAAACGCATTTATTTAT
TGAAAGAAGATATTGAAAATAAAGTTTTAACAATAGTTTTTGATGCTCACTCTACCAAAGAGAG
TGAAATACACTCACTATGTTAGCTAAGCATTTAGGGAGGTAATAATTTCAGTTTTAAACAGTAC
ATGGGGTGATAGGACCTTTATAAAATTAGTGTGTAGCTGAGAATCCAAATATACGTTAAGGGGG
CATTTGACCATTTTCACTAAATTAACTTAGAAAAGTTTAGAGAATACCTCAGCATAAGGATCTT
GGGCGGACTGATTAGAGATGAGCATATCAGAGAACACATTCCACCAGTCCGCGAGAAATGACCC
CGGAGATTTTGGAGCTGAAACAAATCGCAGATTTAAATAATTGAACATTAGAACATCACCACAA
ATAAAATGATCAGTCACTATGTTGTGCACATCCCTCCAAAATAAAGAAGAGCAACTAATACAAT
TTTACAGAAAGCATTTTCAAGAAAAAATTGACCCTAGAACAAGTGCACCACAACATTCAAAGAA
TGGCATTATCTATCATTCCCTTCATTCTATTTGTATGAATACTTTTGGTATGTTACACTCTCTT
TAACCCAATTCATATGACATACTTTACTTTTTCATTTATCCCCAGAAAATTAAAAATACTTTAA
ATTTTCATGTTACTGTGATGATTTATAGTCACACATATTTAAAGCTTATTTTAGACCACATGTA
TAAAGGTCTTTCATAATTTTTGTAGCCCGATGACACATAAATTCGAATATAGAGATCTGGAGGG
CCATCAGAAACCTTTGGCAAAACTAAGAGAAGATTACAGCATTGGAATAGGAAATGCCATGAAG
GTCTCCTTCTGGGAGGACAGTTGGTTAGAACAAGGCTCCTTAAAACCCCTCTTCCCAGATATCT
ACATTCTGAAACAACAACAAAAAGACACTGTGGCAGAAGTTTGGTCAAATCGGGATGGAATCTG
AGCTTCAGAAGGCCCCTATATGATTGGGAGATCCAAAGACTAGTAGATTTCTTTGGAATCCTTG
AGCAATTCAAAGGAACCTCTACCTCCCAAGATGGATTGTTTTGGAATCATAACTGCAATGGAAA
TTTTAGTGTGAAGGAAGCTTACAAAAAGTTCAACTCTTTCATCTATCAGGTTACTGGCTGGCCA
TGGAAACTTATCTGGAAAGTTAAAATACCTCCAAAAGTGTCCTGCTTCACTTAGCTACTAGCAA
AGCAGGCTGTTTTATCCTAGGAAAACCTCATGAAAAGGGGTATCCAACTGAGTCCTAGATGTTT
CCTGTGTGGAGAAGAGGCTGAGTCAGTCAATCACCTCTTTCTTCACTGTAGGATCACTAATATT
TTGTGGAGCATTTTCATCAATTCGAAGGGCCTACTTTGGGTGATGCCAAGAAATATTGTCCAGG
CCCTGAAAACATGGAGTATCTTTGCCTACATTTCTGGTCATAAAGAAGGATGCAAGATCATCCC
CACCTGTATCTGATGGTCTGTGTGGAAAGAGAGGAACCTCAGATGCTTCCAGAACAAAAGTAAC
AGCATCCAGAAGATGAAGATGAATGGCTTGGTTTTATTTCTTTTTTTTCTAGAATCAGTAATGC
ATGCTTTAGGCACCTTGTAATTTTTGTTATTTAGGATTTAAGATCTTCGTGATACTCTCCTTTT
ATTTGTAATTAGTAAACTTGTAACAAGTTATGGCAGGTTTGATTTTTTGGAATATAATACAAGA
CTGTTACCTTCACAAAAGAAAATTGAAGTTGTGCCATAAGACTTCCTTTTTTTCTTAAAATATG
TGTCTAGTCAAACGCCATATAAAAATTAAAATGAAATCAAAGCAATAACATAGTTAACATGATC
ATCAATAAAAGGGTAGCCCAATGCACAATCCATCCTGCATTCACCCAATGTCCGAAAAAAGGCC
CGCAGCCCAAGGGATGTGACTAGGCAGTCTACCCTGAATTATACATCATGCGAAGACAATTTTT
AATGAAGATAAAGCACAGCAATGAGTTCAAATCTGCCATAAATTTAAAGAAAGACTTACCATCA
TCTGTGGGAATTTCAAGATCAACTTCACTCGCGAATGCCTCGGCAGACTCACGCATCCCCTTCT
TAACCAAGTAATCATAGATGCACTTTTCAAGC
Conservation Information
Conserved circRNAs NA
PMCS 0.110908746
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Yang et al., 2020