Detail information of Solyc03g006380.2_circ_igg.3


General Information
CircRNA Name Solyc03g006380.2_circ_igg.3
ID in PlantcircBase sly_circ_000905
Alias NA
Organism Solanum lycopersicum
Position chr3: 980838-985369  JBrowse»
Reference genome SL2.50.38
Type   igg-circRNA
Identification method CIRI; find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Solyc03g006380.2_circ_igg.1 Solyc03g006370.2_circ_ig.1 Solyc03g006380.2_circ_igg.2
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCAGATTAAGTTGACTTTTCAGCTCTACTAAAAAATTCAGGGCTCTGACAGATAAGCTCCATC
CTTGATTACATACTTGTTGGCGAGCCTTATTCTCCTccatcatctgtgggaatttcaagatcaa
cttcactcgcgaatgcctcggcagactcacgcatccccttcttaaccaagtaatcatagatgca
cttttcaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCATCATCTGTGGGAATTTCAAGATCAACTTCACTCGCGAATGCCTCGGCAGACTCACGCATCC
CCTTCTTAACCAAGTAATCATAGATGCACTTTTCAAGCCTGAAGAATTGCCGATAGAATCTCAT
TAATTTGATGTGAATTGTTTTCCCCTAAAGCATTTTCTCGATGAATACGCCTTCCAACATTAAT
TTAAAAGGAAAAAATTAAATTTGACCCTATACTATCTAAAATTCAACCCTGAAGGACAGCCGGT
GCACTAAAGTTCCCGTTATGCACGAAATTCAGGGAAGGACCGGATTACAACGGCGGTCTATTGT
ATACAATCTTACCCAACATTTTTTCAAGAGATTGGACCAGACCACAAAGGTCTAATGTACGTTG
TCTTATAAAGCATTTTTGGAAGAGATTGTTCCCACGGCTTGAACCCGTAACCTTCTGGTTGCAG
TGTAACAACTTTACCAGTTACTCCCAGGCTCCCCTTCCGCCTAGTGAAAATTATTTTCTTATAT
CTTACACTTGTCTCGTATCACTTGCTTCAACAACTAATCATGCCTTCCCTTTCAACTTCTAAAA
CTTAAAAATGTAATCAAAACCCTATTGAAAAATTTCTCCAAAAAATTATTTCCCAAGATAGACC
ACGTTTTACATCAATTACTCTGATTGAGAAAAACATTCAACCATAAAATTAAGAGGACATAAAA
GGAGAAAAGAACATATATCATAAAAAGTTTTAAACTTGTACTCACATCCTTTTAGAATTCCCTG
AGTCCATGATCCAAAAGAAAATGGAGAAAGAGGAGAAAATGAGAGTGAAGATAGATGTTAACAA
GATTTGTCTGCAGAAAACTTAACGGAAGAAAAGATACAAACAAACAACATGTATTATTGACTTA
AAAATACTGAGTGATAAAAGAGACAAGAAAATGGGTGTCAAATAAAGGCAAAAAAGGGAAAAAT
GACATCTATTTTTTCACTATTAAAATGGAAAATTATTTAATAAAAGTGTGTAAAAAAAATATGT
AAATCAAATAAACGATGGGTGATAATTTGTAAAACGAAAATTATGTTGACTTGAAGAGTGTGAG
AAATAAAAGAGACAAGAAAAGGATGCAAAAAGAAAATTTACAATTTCATTGTTAAAATTGAAAC
AAATTCATCATAAAGTATGTATAATAAATAATATGCATGTAAAATATGCAATCAACCGAATGAT
AATGTACATACCAACAATTGTATTGACTTACTGAGATTGAGAAAGAAAAGAAATAGAGAAAGAA
ATCTACATTTCATTGTTAAAATGGAAAAAAAATCATTATGAAGTGTGAGTATAGAAAAAAAGTA
TGGCAGGTAAGTTCAAGCAATTCAATAAATTGAAGGATAAGTGATAATTTGGTTGTTAAATAAA
ATAAAAACAATATGCACAAAAGAATTCATAGCAATAAAAAGTATTCTTGTTTCGTCTCCACAAC
TAAAATATTCTTTAAGATTTAGAGCTTTTTCTTTTTCAATCAATTAATTCATATTACACTTTAT
TTTCCTTTAAGAATTTTCCTTTTATACCTTTTGTACCAGGCAGAAATAATTTATTCGTTTCTTA
TGCGTTTGACTCCTAAAGTCGTTGGATAATTTTTAGAAGTTTTCCTGAAAAGAATATTGAGAGA
ATTTTAATAGAAAAAACTATAAGGTGTAGGGTAATTATATATTTAAGAATTTGATTTGTTTGCC
AAATTTTAAAAAGTATCTGAATTTAAATTCTTAACTATTTGAGAACATTTCTAAAAGTGTTTTC
GGTGAAAACTTTTAAAGAAGTTTATGAAGATAATCTTAGGGCCTTGTATGGTTAGGCACTTCAA
AATTTGTTCCTATAAATTTCCTTTGTTTATTATCTCCGGAGTGGAGAATTAATATTTTTTAAAA
GAGGATCATGAAATAGTGAAAAGAAGAAGACCTAATTTGTATGTGTTCAAAGAATGAGGTAAGC
ATAAAATCGTATGAAATGAAGTTGTTTTCAAATAAATACGATCTCTTTAAAAACACGTACACTT
AACAAAAAATAAGATGCAATAAGAAAAATAAACTAGCAAGTGATACCAATTAGTTGTGACTAAA
GATTTAATAATGATGATACATTTAAGTTAGGTCCACTACCCAGTATTAGTCTTTTGTTCTAGTC
AGAAACTATATGATCATTTAGAAAATGCGGAGAATTTCTAACACTAAGAGCGGTTTCTTTTTTG
TCAGGATTTATATAAATTTCATCATTTATATTTTGCACTTGATTCCATGCTAGGATCATCAACT
AGTCATCATCACTTCTTTAATCTTTTTTACTACAAGTATAAATCCTCACAAAAAAAAATATTAT
TTTTACTTACTTCATCCCCTTTTACTAGTCAATTTATAAAAATAAACTTTTTGTTTTTACTTGT
TCACTTAAGAAATTCACCATTAACATGAAGTAATCACCTTAACTAATTGAAGTACTAATAGTCG
ATTCTTCCTTTTTTAAAGCTCATGCCCACATAAATCAGAACAGAGGGAACGATATAACCTAACC
TTTGTAGAATCCATCATGTCTTTAGTCATTGTCTTCACATCATGGGCTTTCTTTTTGTACTTTA
TCTGCAGTACTAGTATCTGATTTCTTCTTCAATTTTCTTTGCAGTTTTTGTCAAGGATCTTCCA
TGCGTATTTTAGATTTCTCGGTCATCTCGACGATCCTATCCCCTGAATCTGTCACAGTCCAATC
GTTGTTGAAACCTTTATCATAGTCCGATTTTCTTTTATATTTGTCCGATGCATGGTACCCCTAC
ACCATAAACAGTAACAACAAAAGAAAGTCAGTAAAAGCTTCCGTTATCTGCAAAAACTATACTA
TACTCTTTCTGATACTATTTTCTTATTAATTTGCTTCAAAAAGAAAAAGAAAACCTCTTTAGAT
TTAGAGAATTCAATTTTCTTAAGTTTTTTTAACTAAATAAATGTTAATGACTTATTCAAAATTA
CACATTTCAAAAGTTTATACACAAATGGAAGCAGATCTAAAATTTGAATTCTATAGATTCAAGC
ACAAAACTCTACCACAATTCATTTAATTTACCATCTTTTAACACATAGACGGAGCTAGTATAAA
TTTTGAGCTTACAAATTCAGAATTCTGGAGAAGACAAACTTAGCAAAATTCAATAAATAATTTA
TAAATTTTAAGTGAATTTTTAAACGCAAATACAGGATGCATCCCAGGCTAAAGCTACTGGGTTC
AGTGATCCCACCAAACTAGTATGAAGGATTGTAACTTCCCCCCTATTTTAACACATATAAGCCC
GTGTTTTAAATACATACATACATACATATACAAGGTTTAAGTCTAACTAGATTTAAACAGACAA
ATATTATGCCATGCTTAGTACTACCTATCTCATATAAATTTCGTAACTAATCATACTATGTCAT
ATAAATTAAATTGGAAAAAGTATCATAATCATCTACCAAAAACAATAAACAAGGGGGAAGTTGA
AAGGTACCTCGAAATAAGTGGGGGAGGAAGAGAAGCAAACACGAGAGACAGCCTTGGAGAATAG
ACATTACATCCAAAAGACTTCATTCTTAACATTGTTCTTAGTTCTTTAGAATCTTCCATGCATT
GCCTCATTTTCTGAACAACTACAAGACGGTGGTAGAGCCAGGATTTTCAATAAAAAATTTTAAA
ATATCAAGAAGGACACAAAGAAGCAAAGGAATTCAATATCAATATAAACATTAAAAAAAAGTAT
ATTTTCCAGCAAAGAGAGTTGAGATGAACCCCGTTGTGCCCACTATCTAGTATGAGAAAAGAAA
AAATCCTTAATTTCTCCTTTCGCCTGCCTATCACCAAAGTTTTTGTTTATGCTGAAAACTTATG
TAAATCTTCACCATGAAGAGTTCCACTTTTTCCATAATCCTACATAAGGCTCTCACATTTCACA
TTAGAATTTTAAGTTGAATTTCTCCCTTGAATACTGATATGCAGCAAGTTGCAGAAAGATATCT
CAACGACCAAAAATATTTTGGAAACAAATTCACAACTTGATATTGTAATCAAAACAACTGCTAA
GTGTTAAGATCACGGGATCACTTATGAGTATTCAACTTATTCTGGCATGTTCTTCACTTAAGTC
AGCATGCATAAGCATATCACTGTTGAAATCATTAAAATTTGCAAGGGCAGAAAATGTGCGCTCA
AAAGGTTGAGCTGCCAGCCCACTTTAGGTAAAACATCATGCTGAGGACAGGATGAAGTTTAGAA
AATTGTTTCTTTTGATTTGATACTCATAAACTGGGACTTGACAATTGATAGTCAATGGCAGGGG
CCGCAATACCAACTCCCTGAGAACAAAAAACAGAATAAACGAACTTAAAGATGAACCTGAACTG
AATACTATAATCAACGTGCAGATTAAGTTGACTTTTCAGCTCTACTAAAAAATTCAGGGCTCTG
ACAGATAAGCTCCATCCTTGATTACATACTTGTTGGCGAGCCTTATTCTCCT
Conservation Information
Conserved circRNAs NA
PMCS 0.125526125
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Yang et al., 2020