Detail information of Os04g0409200_circ_g.1


General Information
CircRNA Name Os04g0409200_circ_g.1
ID in PlantcircBase osa_circ_023749
Alias Os04circ04858
Organism Oryza sativa
Position chr4: 20240223-20242336  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method SMALT, Segemehl
Parent gene Os04g0409200
Parent gene annotation Similar to H0321H01.10 protein. (Os04t0409200-00)
Parent gene strand -
Alternative splicing Os04g0409200_circ_igg.1 Os04g0409200_circ_igg.2 Os04g0409200_circ_g.3 Os04g0409200_circ_g.4
Support reads 2
Tissues panicle
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0409200-00:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTCAAGTTTGTCTTCAGCCACAACCTTTATGCTTGCTTCTGCCACTGCTGGAATCTCTTCCTC
CTCCTCAAAAGGTTTTACTTTATTATCATCAGGTATcgggctactcattccaatatgtgattca
tatatccgcagcgaatttggtcgtttaggttgaggatgttggaatacatatttttcctgcagtt
gcgtataa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGGGCTACTCATTCCAATATGTGATTCATATATCCGCAGCGAATTTGGTCGTTTAGGTTGAGGA
TGTTGGAATACATATTTTTCCTGCAGTTGCGTATAAACAACATTAGGAGATGGAAAATAAAGGT
TAAAATGGAATATCCTGATCAACAAAGAAAAAAAGTAGTATTACACAGTTCTATAAGGTTTTAG
TGACACGAGCATAGATTTTTTTAAAAAAAATGCAATGGAAAAATATTTCGTTTAAAGACTGTAA
GGTAGAAACATACTTCTTCAGGTGGATCATAATATATACCGTTGTACGGTATTTCACCTGGAGC
CTGCACAGCAAACTTAATCCAGGCAGGAATTGAATCCTTTACGCCAGATGGTGTATCCATCCGA
ATCTGGAAATTAAGAAGGTGAAAGAAGATCTCTCAGTAAGCTCATTTTGAAAATGATTAAACCC
TCAACTAAGTAAATAGCCAATCAGAAAACTTACCTTTACACGTGAGCCATGAGGAATAGCAGGG
GATCCATCAGCATTGTTAGGCAGGGAAATCTCCCAAACACCATACTCATTCTGAAAGTGATCAT
GCCATATATCAACACTAATAAGAGAAAAAACGTTGCTGGCACATGTAAATAGGCTCGTATGCTG
CGAAATACACCCTTCTCATGTCATATAATAAACCAGTGTGGATGGAAGTGTACAAAATTCAAGG
CGATGTTTGGAAAATGGGTTTGGGATATGATTTCCCACCCCCAAAGGGTAAGTTTTGATCTTAG
CCATCCATTCATTTCACCCATTTCATCCTATCCCTCCATTCATTTCCATTTCCCAATCCCACCT
CTCCTAACCCATTTTCCAAACACACCCCAAAAGGCTATATTAACCATTAGGATGCAAAATTGCA
TGCATGTGTTTACTGTTTACCCTAAACATGAATTCTGCTATTTTGGACTCAAAGAAGATGATAG
TTAGTAAAGTAAGGAACAGTGCTCTGTTTTCACTGACTTTGAGACAATATAGAGTAGCAGCATT
TTAGAATGACACACGTGAGGTTCAACTTTAAGGAATATAAACAGAAATAATGAACCCAGATAAT
TGAAAATATATTAATGATACAATACAAAGATGGAAAATAAAAAGGTTGAAGACGTACTCTGGTC
ATAGTATCTGCATTTGGGTTCCAATTGTTGAAGTCACCTACTAATGCTGCAGACTGCAATAGGA
TGAAAATGTCATTTTTAATTCTTAATGTGATGACTGTTTGAAAAGAAGTTCATCAATATATCAT
TTGTGCTACTGGTATAATTCCAGTACACTGGATAGGGAGTAGTGACCACTGCCAAATCACGTAC
CTGTGCTCCAGGTGCCCATTCTCGGTAGGTAATGCCTTCAGCGCTGGAAAGGACGGAATAATGA
TATTGAGTTTGATCATTTGATATCCAAGTAGAATATTGTAGGCATTTCTGTAGTAATGCGACTT
TAATTTTACCTGCGGGTGAATCCAAGCTTTTCGTAACCACGAGAAAATGCATCCAAGCCACCTT
CATGTTGGTCAATAGCTGCACGCATTCTCTTGTATTCACTGTATCTGTTCATACCACCATGCAT
ACCAAAAAAGATATACTGAAGTTAACAGAGTAGGTTTCCCAACAAAAGCGCCAGATATCAGAAA
TTAATTTGCTGAGTTGACAGAGAAGTGAGGGGATTAAACTATGCAGACTACTTGCCACATCCTT
TTTGGTATCTCTAGTGATCAGTGCCAATGATTTGTATTGCATTTGTGAGATATCACCTCTATTT
TCAAATATTATACCAACCTTAATCAAAATGAAAAAAAGTAAATAACTAACCGGTAGTCAAGATG
GTTCCGAAATCCTTCCAGCATTGGGTCAATTTGGTATATCTTCTGCCCATCTCCTGGTGGTGGG
ATAACTCGTGGTTTATCCTCCACAGTTGGTTCATCAGCATCTTTGATCACACCCTCAGTCACAT
TTTCCTCAATGTCTTGAATCACTTCTGAAGATTCAAGTTTGTCTTCAGCCACAACCTTTATGCT
TGCTTCTGCCACTGCTGGAATCTCTTCCTCCTCCTCAAAAGGTTTTACTTTATTATCATCAGGT
AT
Conservation Information
Conserved circRNAs NA
PMCS 0.234136235
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015