Detail information of Os04g0503550_circ_g.7


General Information
CircRNA Name Os04g0503550_circ_g.7
ID in PlantcircBase osa_circ_024487
Alias NA
Organism Oryza sativa
Position chr4: 25130151-25131338  JBrowse»
Reference genome IRGSP-1.0.38
Type   ie-circRNA
Identification method CIRCexplorer
Parent gene Os04g0503500
Parent gene annotation Leucine-rich repeat, cysteine-containing subtype containing prot
ein. (Os04t0503500-01);Leucine-rich repeat, cysteine-containing
subtype containing protein. (Os04t0503500-02)
Parent gene strand -
Alternative splicing Os04g0503550_circ_g.4 Os04g0503550_circ_g.5 Os04g0503550_circ_g.6 Os04g0503550_circ_g.8 Os04g0503550_circ_g.9 Os04g0503550_circ_g.10 Os04g0503550_circ_g.11
Support reads 1
Tissues root
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0503550-00:1
Os04t0503550-00:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAATTAAATTACCCCAAGGACTTCCCTAGAATAAATGTAAGACATTTTCATGGAAGCGTGAAC
TGATAACATAGCACTCGTATGGAAAAGATGCAAAACttttttgagaatacgcacaaaagccttg
tgcatcttttgtattaagagaaagggagtttttaaaactttacaatcttccgctgaaaggaaaa
caagcaaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1188
Transcript exons: 25130151-25131338
TTTTTTGAGAATACGCACAAAAGCCTTGTGCATCTTTTGTATTAAGAGAAAGGGAGTTTTTAAA
ACTTTACAATCTTCCGCTGAAAGGAAAACAAGCAAATGAGAAAGAAAGAAAACACAAAAGGCGT
GGGGCTATATCTCGCAACAAGTTTGGCAACCGTTTAGTGAGCGGTGGCTCAGATGGGCAGGCCA
GCCACACGCCAGACCGCTGCTTCTTCCTCCATGGCCGCGCTTATTACCCCCCCCCCCCCCCCCC
CGCCCGATTTCCTCTCGTTGTTGAACACCTTATTGTTTCTATTAATGAAAATATGATCTCACCA
AACAGGGAGCTTGTTAAGTGTTCATGTAATCATGAAATAGATTACATCAAAGAGCAGTACACCA
GAGTTGTCAAACATACTGTACGCTGAGTACAGAGAAATATCTTAGGCAACTAAAGAGTTCTATA
AACCAGCATTCTAATCGCTAGCTGCGCAACAGTAATATGGTAAGCTTACGCTTCACAGAGAAAT
ATAGGACTGAAAAAAGAAGAAGAAAATGTGCCTCAAGTCAACAATGAATTTCCTTTGAAAATAA
TAAAATGAAATTCCATTACCATCTATAAGCACCAAAAGTAATAAAAAAATCTCTCATTTACAAG
AAGCAGCATAATAGTCCTATAGTACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCC
ACATTCATGTTGATGTTAATGAATCTAGATAAATATATATGTCTAGATTCATTAACATTAATAT
GAATATGGGAAATGCTAAAATGACTTACATTGTGAAACGGAGGGAGTAGAAGCAAGACACTCTC
AAGTTACCTAGCCACTTTGTCATTCTCATTCAACTTGCAAAGGGAATTTCTAAAACTTTCATGT
CAAATCCACCAGAAGAGATTTCTCTGGGGATAAATCCATGAGGTAGTTGACTATATATAGAATG
AGAACCAAAAGAAATGTGTGAAATTTCATGACATGCACTTCTTCAGGTCCCTAAATATCCATTT
TTGGTAATGAATTTAATGGATTATTCTACATGAGTTCTGGCAGATGTGGCACCCTTTCAACAGT
CAAATTAAATTACCCCAAGGACTTCCCTAGAATAAATGTAAGACATTTTCATGGAAGCGTGAAC
TGATAACATAGCACTCGTATGGAAAAGATGCAAAAC

Genomic sequence TTTTTTGAGAATACGCACAAAAGCCTTGTGCATCTTTTGTATTAAGAGAAAGGGAGTTTTTAAA
ACTTTACAATCTTCCGCTGAAAGGAAAACAAGCAAATGAGAAAGAAAGAAAACACAAAAGGCGT
GGGGCTATATCTCGCAACAAGTTTGGCAACCGTTTAGTGAGCGGTGGCTCAGATGGGCAGGCCA
GCCACACGCCAGACCGCTGCTTCTTCCTCCATGGCCGCGCTTATTACCCCCCCCCCCCCCCCCC
CGCCCGATTTCCTCTCGTTGTTGAACACCTTATTGTTTCTATTAATGAAAATATGATCTCACCA
AACAGGGAGCTTGTTAAGTGTTCATGTAATCATGAAATAGATTACATCAAAGAGCAGTACACCA
GAGTTGTCAAACATACTGTACGCTGAGTACAGAGAAATATCTTAGGCAACTAAAGAGTTCTATA
AACCAGCATTCTAATCGCTAGCTGCGCAACAGTAATATGGTAAGCTTACGCTTCACAGAGAAAT
ATAGGACTGAAAAAAGAAGAAGAAAATGTGCCTCAAGTCAACAATGAATTTCCTTTGAAAATAA
TAAAATGAAATTCCATTACCATCTATAAGCACCAAAAGTAATAAAAAAATCTCTCATTTACAAG
AAGCAGCATAATAGTCCTATAGTACTTCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCC
ACATTCATGTTGATGTTAATGAATCTAGATAAATATATATGTCTAGATTCATTAACATTAATAT
GAATATGGGAAATGCTAAAATGACTTACATTGTGAAACGGAGGGAGTAGAAGCAAGACACTCTC
AAGTTACCTAGCCACTTTGTCATTCTCATTCAACTTGCAAAGGGAATTTCTAAAACTTTCATGT
CAAATCCACCAGAAGAGATTTCTCTGGGGATAAATCCATGAGGTAGTTGACTATATATAGAATG
AGAACCAAAAGAAATGTGTGAAATTTCATGACATGCACTTCTTCAGGTCCCTAAATATCCATTT
TTGGTAATGAATTTAATGGATTATTCTACATGAGTTCTGGCAGATGTGGCACCCTTTCAACAGT
CAAATTAAATTACCCCAAGGACTTCCCTAGAATAAATGTAAGACATTTTCATGGAAGCGTGAAC
TGATAACATAGCACTCGTATGGAAAAGATGCAAAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.213122363
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017