Detail information of Os04g0503550_circ_g.8


General Information
CircRNA Name Os04g0503550_circ_g.8
ID in PlantcircBase osa_circ_024488
Alias Os_ciR9446
Organism Oryza sativa
Position chr4: 25131339-25133691  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os04g0503500
Parent gene annotation Leucine-rich repeat, cysteine-containing subtype containing prot
ein. (Os04t0503500-01);Leucine-rich repeat, cysteine-containing
subtype containing protein. (Os04t0503500-02)
Parent gene strand -
Alternative splicing Os04g0503550_circ_g.4 Os04g0503550_circ_g.5 Os04g0503550_circ_g.6 Os04g0503550_circ_g.7 Os04g0503550_circ_g.9 Os04g0503550_circ_g.10 Os04g0503550_circ_g.11
Support reads 2/2
Tissues root/shoot, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0503550-00:7
Os04t0503500-01:7
Os04t0503550-00:7
Os04t0503500-02:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAAGCGCATATCATTCTAGCTCGTGACTGTGTGATTCTTTGTCATCCATTCCCAGCACGATTA
CGACTTGGCATAGACTTCGCTCTCTTTGGCCCCATTctgaaataacctccaaacaagcagcagt
tactgcacagccctccaggtttaggtgagctagcttcgatagacctgtaaagaacaaatacaaa
atatgaaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1062
Transcript exons: 25131339-25131410,25131580-25131651,25131744-25131818,25
132094-25132240,25132368-25132575,25133131-25133259,2513
3333-25133691
CTGAAATAACCTCCAAACAAGCAGCAGTTACTGCACAGCCCTCCAGGTTTAGGTGAGCTAGCTT
CGATAGACCTCTTAGATAAGAAACACCAAGATCACTTATTTTGCAGCAAGAAAGTTGAAGCTCT
CTCAAATTTGTAAGATCTGATAAATGTTTCATATCAGAATCTGTGATGCCATTACAATACCTCA
AATTTAGCTTTTCCAGTTTTCTCAAGCCTTTTAAATGAACAAGTCCACCATGAATCTTCGGACA
TCGCTCAAGGTCCAAGCTACCCAAATTAACCATGTTTGCAAAGGCTTTAGCTCCTTCAGCAGTA
ACAGCAGAACATTTTTTAAAGCTCAGGGATGTCACATTTGAGAGGCCTGACAATGTTTTAAGTC
CATGCTCCGATATCTGATCACAGTAATTGCATGACAAACTTTGCAAGTTGATGCAATCCTTGAG
TTGATTCAGTCCACCATCAGTCACATCAGAGCAAGAGATATCAACAGATAACAATGATTGCCCT
TGAGAAGCCGCTACTTCCATCCAAGCATCCCTCACCCCAGGGTAGTCTGCCAAACAGATGTCCT
GCAATGCACAATCACGAAAAGCTCCAAGCAACTCTTCAGTGAGAATGTTCCACTCCACCAGTTC
ATTAAATACCTGCTGACTAAGATCTCTAGGCAGCAGCGAGAAATCAGAATACTTCCCAATATCC
TCGCGGACTTTGGCCACACAGAGCTCCATTAGCGATGGGCACCGCACAGGCACTGGTCCCTGCA
CCTTCCTGTGTACATCAGAGCCGCTGCGGGGCAAGGTGTGCAGTAGCCACTTGAAGCTGCTGCT
CTTGGAGAACCTTGCACTGTAGAGATCTTCCTCATCAACAAGCAGCTGGCCTCTCTTCCTAGAG
CAAGCACTTCCCATGGCGACGATGCGAGCACCGATCACAAACCAATCACTTCTTCTTGATGGAC
TAAAAAGCGCATATCATTCTAGCTCGTGACTGTGTGATTCTTTGTCATCCATTCCCAGCACGAT
TACGACTTGGCATAGACTTCGCTCTCTTTGGCCCCATT

Transcript length: 249
Transcript exons: 25131339-25131402,25133507-25133691
CTGAAATAACCTCCAAACAAGCAGCAGTTACTGCACAGCCCTCCAGGTTTAGGTGAGCTAGCTT
CTGGCCTCTCTTCCTAGAGCAAGCACTTCCCATGGCGACGATGCGAGCACCGATCACAAACCAA
TCACTTCTTCTTGATGGACTAAAAAGCGCATATCATTCTAGCTCGTGACTGTGTGATTCTTTGT
CATCCATTCCCAGCACGATTACGACTTGGCATAGACTTCGCTCTCTTTGGCCCCATT

Genomic sequence CTGAAATAACCTCCAAACAAGCAGCAGTTACTGCACAGCCCTCCAGGTTTAGGTGAGCTAGCTT
CGATAGACCTGTAAAGAACAAATACAAAATATGAAACAGAGGCTAACTTTAGATGAAACTTCAT
GTCATTATATTAATAGAAACAACGAATTAATCAGAATATTACAGATACAAATGGATGTAGCTTT
AGGTAGATAAGGTTCCACTGGAAAAGGAAGAAATTTATTTCTGGGATACCTCTTAGATAAGAAA
CACCAAGATCACTTATTTTGCAGCAAGAAAGTTGAAGCTCTCTCAAATTTGTAAGATCTACAAG
GAAAAGGGTATTTATTAGACGTGCAGATCAGTATGTGTGATAACATACACTGCTTGACACTAGA
TGGTCAACATAAAGGTGTTACCTGATAAATGTTTCATATCAGAATCTGTGATGCCATTACAATA
CCTCAAATTTAGCTTTTCCAGTTTTCTCAAGCCTGAAAAAGAAAGTTATTATTGGATCTGACAG
AAGTATAATTAAAATGTATTCACGATTGAGTAGCGTTTGAACAAATAGGTAGCATGCCAGTCTT
CCCTGTATTTATTACAAAGAAAGATATATAAAAGCTCTGGATGATAAATATATCTCTGTTTCAT
TGGGGTGTAGGGTGCGGGGAACACATGGTAAATGATAAAATTAGATCATGCATTTATAATAAAT
AAGTTGGCTGTGGTTACATTGTGATGATATATTAATGAAATAGCAGGAAACCTTTTAAATGAAC
AAGTCCACCATGAATCTTCGGACATCGCTCAAGGTCCAAGCTACCCAAATTAACCATGTTTGCA
AAGGCTTTAGCTCCTTCAGCAGTAACAGCAGAACATTTTTTAAAGCTCAGGGATGTCACATTTG
AGAGGCCTGCAGAATTAAAAAGCAATACCATAAATGACAGGAACAGAATATCTAGTGATCAGGA
ACATTGACACCACTCTTATCATAGAGATGGAAGAAAACTCAACTCTCAGGCTATCAGAAAATCA
CTAACCTGACAATGTTTTAAGTCCATGCTCCGATATCTGATCACAGTAATTGCATGACAAACTT
TGCAAGTTGATGCAATCCTTGAGTTGATTCAGTCCACCATCAGTCACATCAGAGCAAGAGATAT
CAACAGATAACAATGATTGCCCTTGAGAAGCCGCTACTTCCATCCAAGCATCCCTCACCCCAGG
GTAGTCTGCCAAACAGATGTCCTGAGACCAAGTAGAAGAATAGCATAGGAGGTCAATATCTAGT
CTCAGAGTAACTTATCCCAGAAACAAGAAATACTCCAAATTTGGTCCTTTCTTTATGTGGCACA
CAAGTAAAGCGATTGCTTGGCTTGCTTGTAGCAGGAAGATAGAAGCATCATCTGAGTTACACAG
AATAAGATAGCAGCTGTGCACGTGAGCTCAACTGGTCTATTAGTATCAGTACCCAGTGGAGGCT
TCCTTGAGTGGATTTTCCTCAATTGCTTACAGGATAAATTTTACCAACACATTTTAGTTTACTT
TCCTGAGTTAGCTTATAAAAATAAGCTATAAAATCGTTTACAACATAGTAAGAATTGTTCCAAC
AAGATGCCTTTATTCGTTCCCTGATACTACATTGAAAGTTAGAAACTGCTACAAGGGAATGTCA
GGATTGCATTCCATAGAGTTTGCAATAATTCCATATTGATTTTCCTTGTTTAGAATTGAGTCAT
TTTTTTCGCGAACGTGTTTAGAGCTCAGTCATAATTACGTGCCAAACAAGATCAAGCACTTCAC
CTGCAATGCACAATCACGAAAAGCTCCAAGCAACTCTTCAGTGAGAATGTTCCACTCCACCAGT
TCATTAAATACCTGCTGACTAAGATCTCTAGGCAGCAGCGAGAAATCAGAATACTTCCCAATAT
CCTGAAATCACCCCTCATCAAGTCAGGCAACAATACACACAGAAAACTCAATCATCCAAGGCCA
CAAGCACTACCTCGCGGACTTTGGCCACACAGAGCTCCATTAGCGATGGGCACCGCACAGGCAC
TGGTCCCTGCACCTTCCTGTGTACATCAGAGCCGCTGCGGGGCAAGGTGTGCAGTAGCCACTTG
AAGCTGCTGCTCTTGGAGAACCTTGCACTGTAGAGATCTTCCTCATCAACAAGCAGCTGGCCTC
TCTTCCTAGAGCAAGCACTTCCCATGGCGACGATGCGAGCACCGATCACAAACCAATCACTTCT
TCTTGATGGACTAAAAAGCGCATATCATTCTAGCTCGTGACTGTGTGATTCTTTGTCATCCATT
CCCAGCACGATTACGACTTGGCATAGACTTCGCTCTCTTTGGCCCCATT
Conservation Information
Conserved circRNAs osi_circ_005588*
PMCS 0.422192457
Functional Information
Coding potential Y
Potential coding position 25133541-25133605(-)
Potential amino acid sequence MGSACSRKRGQLLVDEEDLYSARFSKSSSFKWLLHTLPRSGSDVHRKVQGPVPVRCPSLMELCV
AKVREDIGKYSDFSLLPRDLSQQVFNELVEWNILTEELLGAFRDCALQDICLADYPGVRDAWME
VAASQGQSLLSVDISCSDVTDGGLNQLKDCINLQSLSCNYCDQISEHGLKTLSGLSNVTSLSFK
KCSAVTAEGAKAFANMVNLGSLDLERCPKIHGGLVHLKGLRKLEKLNLRYCNGITDSDMKHLSD
LTNLRELQLSCCKISDLGVSYLRGLSKLAHLNLEGCAVTAACLEVISEWGQRERSLCQVVIVLG
MDDKESHSHELE*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017