Detail information of 4_circ_igg.5


General Information
CircRNA Name 4_circ_igg.5
ID in PlantcircBase ath_circ_029859
Alias NA
Organism Arabidpsis thaliana
Position chr4: 3054699-3059213  JBrowse»
Reference genome TAIR10.38
Type   ig-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 4_circ_igg.6 4_circ_igg.7 4_circ_igg.8 4_circ_igg.9 4_circ_igg.10 4_circ_igg.11 4_circ_igg.12 4_circ_igg.13 4_circ_igg.14 4_circ_igg.15 4_circ_igg.16 4_circ_igg.17 4_circ_igg.18 4_circ_igg.19 4_circ_igg.20 4_circ_igg.21 4_circ_igg.22 4_circ_igg.23 4_circ_igg.24 4_circ_igg.25 4_circ_igg.26 4_circ_ag.27 4_circ_igg.28 4_circ_ag.29
Support reads 2
Tissues seed
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTAAAAAAAGAATATATACGATTGCATTGCATATGCTAACGGATGCGATCATACCAGCACTAAT
GCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGtaacggatgcgatcataccagcactaat
gcaccggatcccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatgggt
gacctccc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TAACGGATGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTG
CTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCCGGGAAGTCCTCGTGTTGCATCCCTCTGT
TTTTTTTTTTTTTTTTTGGTTAAAAATTTATGACTCTATAACTTCTATACCGTGAGGCCAAACT
TGGCATGTGATACCTTTTCGGAAAGCCCAAAGAGAGCCCTCCGACGAAAGAAGCAAGACAATGG
AACTTTTCCATTGACTTTTTGTCGACTCCAAATTTTGACCTTTAAGTACTTTTTCGGGCATTTT
CGTGATTTGTGCTATATTACGGACCCAAAATTACTTTTTCAAGCATTGTTTTCGAATATTTTTC
ATGCATCAAAGCTCGTTAAGACTAGATGGGGTATCCCTACATGGCGGGTGGGACCCACGGCGAA
TGGTTCATCAAGACTTAAAAAAAGAATATATACGATTGCATTGCATATACTAACGGATGCGATC
ATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTA
GTACTAGGATGGGTGACCTCCCGGGAAGTCCTCGTGTTGCATCCCTCTTTTTTTTTTTTTTTTT
TTTGGTTAAAACTTTATGACTCTATAACTTCTATACCGTGAGGCCAAACTTGGCATGTGATACC
TTTTTGGAAAGCCCAAAGAGAGCCCTCCGACGAAAGAAGCAAGACAATGGAACTTTTCCATTGA
CTTTTTGTCGACTCCAAATTTTGACCTTTAAGTACTTTTTCGGGCATTTTCGTGATTTGTGCTA
TATTACGGACCCAAAATTACTTTTTCAAGCATTGTTTTCGAATATTTTTCATGCATCAAAGCTC
GTTAAGACTAGATGGGGTATCCCTACATGGCGGGTGGGACCCACGGCGAACGGTTCATCAAGAC
TTAAAAAAAGAATATATACGATTGCATTGCATATGCTAACGGATGCGATCATACCAGCACTAAT
GCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGGAGTACTAGGATGGGT
GACCTCCCGGGAAGTCCTCGTGTTGCATCCCTCTTTTTTTTTTTTTTTTTTTTGGTTAAAACTT
TATGACTCTATAACTTCTATACCGTGAGGCCAAACTTGGCATGTGATACCTTTTCGGAAAGCCC
AAAGAGAGCCCTCCGACGAAAGAAGCAAGACAATGGAACTTTTCCATTGACTTTTTGTCGACTC
CAAATTTTGACCTTTAAGTACTTTTTCGGGCATTTTCGTGATTTGTGCTATATTACGGACCCAA
AATTACTTTTTCAAGCATTGTTTTCGAATATTTTTCATGCATCAAAGCTCGTTAAGACTAGATG
GGGTATCCCTACATGGCGGGTGGGACCCACGGCGAACGGTTCATCAAGACTTAAAAAAAGAATA
TATACGATTGCATTGCATATGCTAACGGATGCGATCATACCAGCACTAATGCACCGGATCCCAT
CAGAACTCCGCAGTTAAGCGTGCTTTGGCGAGAGTAGTACTAGGATGGGTGACCTCCCGGGAAG
TCCTCGTGTTGCATCCCTCTTTTTTTTTTTTTTTTTTTTGGTTAAAACTTTATGACTCTATAAC
TTCTATACCGTGAGGCCAAACTTGGCATGTGATACCTTTTCGGAAAGCCCAAAGAGAGCCCTCC
GACGAAAGAAGCAAGACAATGGAACTTTTCCATTGACTTTTTGTCGACTCCAAATTTTGACCTT
TAAGTACTTTTTCGGGCATTTTCGTGATTTGTGCTATATTACGGACCCAAAATTACTTTTTCAA
GCATTGTTTTCGAATATTTTTCATGCATCAAAGCTCGTTAAGACTAGATGGGGTATCCCTACAT
GGCGGGTGGGACCCACGGCGAACGGTTCATCAAGACTTAAAAAAAGAATATATACGATTGCATT
GCATATGCTAACGGATGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGT
TAAGCGACCTCCCGGGAAGTCCTCGTGTTGCATCCCTCTTTTTTTTTTTTTTTTTTTTGGTTAA
AACTTTATGACTCTATAACTTCTATACCGTGAGGCCAAACTTGGCATGTGATACCTTTTCGGAA
AGCCCAAAGAGAGCCCTCCGACGAAAGAAGCAAGACAATGGAACTTTTCCATTGACTTTTTGTC
GACTCCAAATTTTGACCTTTAAGTACTTTTTCGGGCATTTTCGTGATTTGTGCTATATTACGGA
CCCAAAATTACTTTTTCAAGCATTGTTTTCGAATATTTTTCATGCATCAAAGCTCGTTAAGACT
AGATGGGGTATCCCTACATGGCGGGTGGGACCCACGGCGAACGGTTCATCAAGACTTAAAAAAA
GAATATATACGATTGCATTGCATATGCTAACGGATGCGATCATACCAGCACTAATGCACCGGAT
CCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCCG
GGAAGTCCTCGTGTTGCATCCCTCTTTTTTTTTTTTTTTTTTTTGGTTAAAACTTTATGACTCT
ATAACTTCTATACCGTGAGGCCAAACTTGGCATGTGATACCTTTTCGGAAAGCCCAAAGAGAGC
CCTCCGACGAAAGAAGCAAGACAATGGAACTTTTCCATTGACTTTTTGTCGACTCCAAATTTTG
ACCTTTAAGTACTTTTTCGGGCATTTTCGTGATTTGTGCTATATTACGGACCCAAAATTACTTT
TTCAAGCATTATTTTCGAATATTTTTCATGCATCAAAGCTCGTTAAGACTAGATGGGGTATCCC
TACATGGCGGGTGGGACCCACGGCGAACGGTTCATCAAGACTTAAAAAAAGAATATATACGATT
GCATTGCATATGCTAACGGATGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCC
GCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCCGGGAAGTCCTCGTGT
TGCATCCCTCTTTTTTTTTTTTTTTTTTTTGGTTAAAACTTTATGACTCTATAACTTCTATACC
GTGAGGCCAAACTTGGCATGTGATACCTTTTCGGAAAGCCCAAAGAGAGCCCTCCGACGAAAGA
AGCAAGACAATGGAACTTTTCCATTGACTTTTTGTCGACTCCAAATTTTGACCTTTAAGTACTT
TTTCGGGCATTTTCGTGATTTGTGCTATATTACGGACCCAAAATTACTTTTTCAAGCATTGTTT
TCGAATATTTTTCATGCATCAAAGCTCGTTAAGACTAGATGGGGTATCCCTACATGGCGGGTGG
GACCCACGGCGAACGGTTCATCAAGACTTAAAAAAAGAATATATACGATTGCATTGCATATGCT
AACGGATGCGATCATACCAGCACTAATGCACCGGATCCCATTAGAACTCCGCAGTTAAGCGTGC
TTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCCGGGAAGTCCTCGTGTTGCATCCCTCTTTT
TTTTTTTTTTTTTTTTGGTTAAAACTTTATGACTCTATAACTTCTATACCGTGAGGCCAAACTT
GGCATGTGATACCTTTTCGGAAAGCCCAAAGAGAGCCCTCCGACGAAAGAAGCAAGACAATGGA
ACTTTTCCATTGACTTTTTGTCGACTCCAAATTTTGACCTTTAAGTACTTTTTCGGGCATTTTC
GTGATTTGTGCTATATTACGGACCCAAAATTACTTTTTCAAGCATTGTTTTCGAATATTTTTCA
TGCATCAAAGCTCGTTAAGACTAGATGGGGTATCCCTACATGGCGGGTGGGACCCACGGCGAAC
GGTTCATCAAGACTTAAAAAAAGAATATATACGATTGCATTGCATATGCTAACGGATGCGATCA
TACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAG
TACTAGGATGGGTGACCTCCCGGGAAGTCCTCGTGTTGCATCCCTCTTTTTTTTTTTTTTTTTT
TTGGTTAAAACTTTATGACTCTATAACTTCTATACCGTGAGGCCAAACTTGGCATGTGATACCT
TTTCGGAAAGCCCAAAGAGAGCCCTCCGACGAAAGAAGCAAGACAATGGAACTTTTCCATTGAC
TTTTTGTCGACTCCAAATTTTGACCTTTAAGTACTTTTTCGGGCATTTTCGTGATTTGTGCTAT
ATTACGGACCCAAAATTACTTTTTCAAGCATTGTTTTCGAATATTTTTCATGCATCAAAGCTCG
TTAAGACTAGATGGGGTATCCCTACATGGCGGGTGGGACCCACGGCGAACGGTTCATCAAGACT
TAAAAAAAGAATATATACGATTGCATTGCATATGCTAACGGATGCGATCATACCAGCACTAATG
CACCGGATCCCATCAGAACTCCGCAGTTAAGCGTG
Conservation Information
Conserved circRNAs NA
PMCS 0.108899707
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017