Detail information of 4_circ_igg.12


General Information
CircRNA Name 4_circ_igg.12
ID in PlantcircBase ath_circ_029866
Alias NA
Organism Arabidpsis thaliana
Position chr4: 3055201-3059771  JBrowse»
Reference genome TAIR10.38
Type   ig-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 4_circ_igg.5 4_circ_igg.6 4_circ_igg.7 4_circ_igg.8 4_circ_igg.9 4_circ_igg.10 4_circ_igg.11 4_circ_igg.13 4_circ_igg.14 4_circ_igg.15 4_circ_igg.16 4_circ_igg.17 4_circ_igg.18 4_circ_igg.19 4_circ_igg.20 4_circ_igg.21 4_circ_igg.22 4_circ_igg.23 4_circ_igg.24 4_circ_igg.25 4_circ_igg.26 4_circ_ag.27 4_circ_igg.28 4_circ_ag.29
Support reads 2
Tissues seed
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGAT
GGGTGACCTCCCGGGAAGTCCTCGTGTTGCATCCCTggatgcgatcataccagcactaatgcac
cggatcccatcagaactccgcagttaagcgtgcttgggcgagagtagtactaggatgggtgacc
tcccggga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGATGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTG
GGCGAGAGTAGTACTAGGATGGGTGACCTCCCGGGAAGTCCTCGTGTTGCATCCCTCTTTTTTT
TTTTTTTTTTTTTGGTTAAAACTTTATGACTCTATAACTTCTATACCGTGAGGCCAAACTTGGC
ATGTGATACCTTTTTGGAAAGCCCAAAGAGAGCCCTCCGACGAAAGAAGCAAGACAATGGAACT
TTTCCATTGACTTTTTGTCGACTCCAAATTTTGACCTTTAAGTACTTTTTCGGGCATTTTCGTG
ATTTGTGCTATATTACGGACCCAAAATTACTTTTTCAAGCATTGTTTTCGAATATTTTTCATGC
ATCAAAGCTCGTTAAGACTAGATGGGGTATCCCTACATGGCGGGTGGGACCCACGGCGAACGGT
TCATCAAGACTTAAAAAAAGAATATATACGATTGCATTGCATATGCTAACGGATGCGATCATAC
CAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGGAGTAC
TAGGATGGGTGACCTCCCGGGAAGTCCTCGTGTTGCATCCCTCTTTTTTTTTTTTTTTTTTTTG
GTTAAAACTTTATGACTCTATAACTTCTATACCGTGAGGCCAAACTTGGCATGTGATACCTTTT
CGGAAAGCCCAAAGAGAGCCCTCCGACGAAAGAAGCAAGACAATGGAACTTTTCCATTGACTTT
TTGTCGACTCCAAATTTTGACCTTTAAGTACTTTTTCGGGCATTTTCGTGATTTGTGCTATATT
ACGGACCCAAAATTACTTTTTCAAGCATTGTTTTCGAATATTTTTCATGCATCAAAGCTCGTTA
AGACTAGATGGGGTATCCCTACATGGCGGGTGGGACCCACGGCGAACGGTTCATCAAGACTTAA
AAAAAGAATATATACGATTGCATTGCATATGCTAACGGATGCGATCATACCAGCACTAATGCAC
CGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTTGGCGAGAGTAGTACTAGGATGGGTGACC
TCCCGGGAAGTCCTCGTGTTGCATCCCTCTTTTTTTTTTTTTTTTTTTTGGTTAAAACTTTATG
ACTCTATAACTTCTATACCGTGAGGCCAAACTTGGCATGTGATACCTTTTCGGAAAGCCCAAAG
AGAGCCCTCCGACGAAAGAAGCAAGACAATGGAACTTTTCCATTGACTTTTTGTCGACTCCAAA
TTTTGACCTTTAAGTACTTTTTCGGGCATTTTCGTGATTTGTGCTATATTACGGACCCAAAATT
ACTTTTTCAAGCATTGTTTTCGAATATTTTTCATGCATCAAAGCTCGTTAAGACTAGATGGGGT
ATCCCTACATGGCGGGTGGGACCCACGGCGAACGGTTCATCAAGACTTAAAAAAAGAATATATA
CGATTGCATTGCATATGCTAACGGATGCGATCATACCAGCACTAATGCACCGGATCCCATCAGA
ACTCCGCAGTTAAGCGACCTCCCGGGAAGTCCTCGTGTTGCATCCCTCTTTTTTTTTTTTTTTT
TTTTGGTTAAAACTTTATGACTCTATAACTTCTATACCGTGAGGCCAAACTTGGCATGTGATAC
CTTTTCGGAAAGCCCAAAGAGAGCCCTCCGACGAAAGAAGCAAGACAATGGAACTTTTCCATTG
ACTTTTTGTCGACTCCAAATTTTGACCTTTAAGTACTTTTTCGGGCATTTTCGTGATTTGTGCT
ATATTACGGACCCAAAATTACTTTTTCAAGCATTGTTTTCGAATATTTTTCATGCATCAAAGCT
CGTTAAGACTAGATGGGGTATCCCTACATGGCGGGTGGGACCCACGGCGAACGGTTCATCAAGA
CTTAAAAAAAGAATATATACGATTGCATTGCATATGCTAACGGATGCGATCATACCAGCACTAA
TGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGG
TGACCTCCCGGGAAGTCCTCGTGTTGCATCCCTCTTTTTTTTTTTTTTTTTTTTGGTTAAAACT
TTATGACTCTATAACTTCTATACCGTGAGGCCAAACTTGGCATGTGATACCTTTTCGGAAAGCC
CAAAGAGAGCCCTCCGACGAAAGAAGCAAGACAATGGAACTTTTCCATTGACTTTTTGTCGACT
CCAAATTTTGACCTTTAAGTACTTTTTCGGGCATTTTCGTGATTTGTGCTATATTACGGACCCA
AAATTACTTTTTCAAGCATTATTTTCGAATATTTTTCATGCATCAAAGCTCGTTAAGACTAGAT
GGGGTATCCCTACATGGCGGGTGGGACCCACGGCGAACGGTTCATCAAGACTTAAAAAAAGAAT
ATATACGATTGCATTGCATATGCTAACGGATGCGATCATACCAGCACTAATGCACCGGATCCCA
TCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCCGGGAA
GTCCTCGTGTTGCATCCCTCTTTTTTTTTTTTTTTTTTTTGGTTAAAACTTTATGACTCTATAA
CTTCTATACCGTGAGGCCAAACTTGGCATGTGATACCTTTTCGGAAAGCCCAAAGAGAGCCCTC
CGACGAAAGAAGCAAGACAATGGAACTTTTCCATTGACTTTTTGTCGACTCCAAATTTTGACCT
TTAAGTACTTTTTCGGGCATTTTCGTGATTTGTGCTATATTACGGACCCAAAATTACTTTTTCA
AGCATTGTTTTCGAATATTTTTCATGCATCAAAGCTCGTTAAGACTAGATGGGGTATCCCTACA
TGGCGGGTGGGACCCACGGCGAACGGTTCATCAAGACTTAAAAAAAGAATATATACGATTGCAT
TGCATATGCTAACGGATGCGATCATACCAGCACTAATGCACCGGATCCCATTAGAACTCCGCAG
TTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCCGGGAAGTCCTCGTGTTGCA
TCCCTCTTTTTTTTTTTTTTTTTTTTGGTTAAAACTTTATGACTCTATAACTTCTATACCGTGA
GGCCAAACTTGGCATGTGATACCTTTTCGGAAAGCCCAAAGAGAGCCCTCCGACGAAAGAAGCA
AGACAATGGAACTTTTCCATTGACTTTTTGTCGACTCCAAATTTTGACCTTTAAGTACTTTTTC
GGGCATTTTCGTGATTTGTGCTATATTACGGACCCAAAATTACTTTTTCAAGCATTGTTTTCGA
ATATTTTTCATGCATCAAAGCTCGTTAAGACTAGATGGGGTATCCCTACATGGCGGGTGGGACC
CACGGCGAACGGTTCATCAAGACTTAAAAAAAGAATATATACGATTGCATTGCATATGCTAACG
GATGCGATCATACCAGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGG
GCGAGAGTAGTACTAGGATGGGTGACCTCCCGGGAAGTCCTCGTGTTGCATCCCTCTTTTTTTT
TTTTTTTTTTTTGGTTAAAACTTTATGACTCTATAACTTCTATACCGTGAGGCCAAACTTGGCA
TGTGATACCTTTTCGGAAAGCCCAAAGAGAGCCCTCCGACGAAAGAAGCAAGACAATGGAACTT
TTCCATTGACTTTTTGTCGACTCCAAATTTTGACCTTTAAGTACTTTTTCGGGCATTTTCGTGA
TTTGTGCTATATTACGGACCCAAAATTACTTTTTCAAGCATTGTTTTCGAATATTTTTCATGCA
TCAAAGCTCGTTAAGACTAGATGGGGTATCCCTACATGGCGGGTGGGACCCACGGCGAACGGTT
CATCAAGACTTAAAAAAAGAATATATACGATTGCATTGCATATGCTAACGGATGCGATCATACC
AGCACTAATGCACCGGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACT
AGGATGGGTGACCTCCCGGGAAGTCCTCGTGTTGCATCCCTCTTTTTTTTTTTTTTTTTTTTGG
TTAAAACTTTATGACTCTATAACTTCTATACCGTGAGGCCAAACTTGGCATGTGATACCTTTTC
GGAAAGCCCAAAGAGAGCCCTCCGACGAAAGAAGCAAGACAATGGAACTTTTCCATTGACTTTT
TGTCGACTCCAAATTTTGACCTTTAAGTACTTTTTCGGGCATTTTCGTGATTTGTGCTATATTA
CGGACCCAAAATTACTTTTTCAAGCATTGTTTTCGAATATTTTTCATGCATCAAAGCTCGTTAA
GACTAGATGGGGTATCCCTACATGGCGGGTGGGACCCACGGCGAACGGTTCATCAAGACTTAAA
AAAAGAATATATACGATTGCATTGCATATGCTAACGGATGCGATCATACCAGCACTAATGCACC
GGATCCCATCAGAACTCCGCAGTTAAGCGTGCTTGGGCGAGAGTAGTACTAGGATGGGTGACCT
CCCGGGAAGTCCTCGTGTTGCATCCCT
Conservation Information
Conserved circRNAs NA
PMCS 0.223567009
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017