Detail information of Os11g0199700_circ_g.9


General Information
CircRNA Name Os11g0199700_circ_g.9
ID in PlantcircBase osa_circ_008776
Alias Os11circ02499
Organism Oryza sativa
Position chr11: 5003722-5005876  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer, SMALT, Segemehl, circseq_cup
Parent gene Os11g0199700
Parent gene annotation Similar to VHS and GAT domain protein. (Os11t0199700-01);Similar
to Seed protein B32E (Fragment). (Os11t0199700-02)
Parent gene strand -
Alternative splicing Os11g0199700_circ_g.7 Os11g0199700_circ_g.8
Support reads 2/4/5
Tissues leaf/root/shoot, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os11t0199700-02:3
Os11t0199700-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCGCCCAATCCGGCCCGATCAGCATGTCGCTCGTCGCCCTCTCCGCGCACGCCACGGCCGTCG
CCATTTTCCCCCTCTCACCACCAAAAACCCTAAATCctttttctttactatcttaaccatttca
cttaatatgtctcgctcaatgatttgctggtaaacaacatccccacagtttttgcttagagtct
ctagcacc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 317
Transcript exons: 5003722-5003820,5004103-5004181,5005738-5005876
CTTTTTCTTTACTATCTTAACCATTTCACTTAATATGTCTCGCTCAATGATTTGCTGGTAAACA
ACATCCCCACAGTTTTTGCTTAGAGTCTCTAGCACATAAAGCGTCAGAATTTGCACTTTTGAAT
TCTTGTTTCCCAGGCGTTTCTTTAGGAGCTTGAGTGTATCCTTGGCTTGTCCGGGATCCATGTT
GATGATGTCGCAGAGCTCGATGTTCACCGCCCAATCCGGCCCGATCAGCATGTCGCTCGTCGCC
CTCTCCGCGCACGCCACGGCCGTCGCCATTTTCCCCCTCTCACCACCAAAAACCCTAAATC

Genomic sequence CTTTTTCTTTACTATCTTAACCATTTCACTTAATATGTCTCGCTCAATGATTTGCTGGTAAACA
ACATCCCCACAGTTTTTGCTTAGAGTCTCTAGCACCTGAAAAGGAAGACAAACAAACAGAACAA
ATCAGCACATTAAACAAGACATGACTGTGCACATAGAAACTATGCTCTTTGTTTCCTAAATCTG
GAGGAAGCACAAGAAGTTTCCAAAATCTGGAAGAAGAACAAGAAATAACTTCTAAATTTGTGTA
GCTAGTGAAGACAGGTGAATTCTTAAATTTAGGAATGAATCGACCTAAAACTCACATTGTTAAA
ACAAAAAAATCAGAAGATAACACACTGAGTATCAATATACAAGGACTCTTGAAATACTCACATA
AAGCGTCAGAATTTGCACTTTTGAATTCTTGTTTCCCAGGCGTTTCTTTAGGAGCTTGAGTGTA
TCCTTGGCTTGTCTGTACTTCAGCAAACATTTATGAGCATGCTATAAAACATGACAAACCAAAA
GTTGTATGGGGACATTGAAAATAAATCCCAGAAAGTATTTAAGACGAAACAATTATGTCAACAA
TTCAATATACAAAACTCATTATGCAATGTGCATCACTCAACCATGAACCGAATTATCAACAAAT
TATAGCAAAATGTCTTAAATTAGTGTGGCATCACATACACAGATTTTAATGTTAGCAAATGCCA
CAGATTATAAAATGTAATCACTGCCTGGAGAGACATATAAACCATATTGGAAGTTGGAAGACTA
AAAGTTATTGAAGCTATATATCACACCAACGTACAGCAGAGTAGAGAAACAAAGTTTTTTTTTT
CTCTCGAACACGCAGGAGAGTTGCATATCATTATATTAAGATAAAAGAGTTAAAAAGGACTCAT
GCATGCCCATAACGGGAACAAAGGCTATAAGAACTTTCCAAAGAAACAACAAAAAACTACACCA
TGACTTAGCTTCATCTCTAACATCCTGCATGACGGAATTGAAATTAGCTGAAACCTCTCCAAAG
ACACATCCACCTATGTTTCCAAATCAACCAAGCCACCAACACAACTAATGAGTTAAAACCCTTG
CGATGTTGCTTAGCCACTTTCTGCAAAGCTTAAAGCCACCACATGGTGAAAACAGTGTCATCGG
GACCTTATCTAAGGTGCTGCAAGCCAACCAAGGACAAAACTGAGAACCATACACTTCTTGTGAA
CACACATAAAGTGAGCAAGTGCTGCACATTCTCCTCCTCTTGATTACACAATGGATATTGCCAA
GATGGTCAACACTGCGATGGGCCAATCGGTCAGCAGTCCAACAACGATTTAGCGAGGCTAACCA
CACAAAAGAATTGCAAAGAGGCCAAAGCTCAAGTTTTCCAAACTTCCTTCCACGGCTCAAATTA
CATGCCCCTGATGAGTTTTTTTTTTTGTGTGTGTGCTCTCATTGCTGATATCATCATGGCAAAA
AGTGATGTCATACCTAAACTGCACCTCAACAACAAATGACACCAACTCATCACCAAAATCAGTG
GCCTCCATGAGATTATAGCTCAACTAACCAATCACAAACTATCATCAATTATTGAGTTATTCTG
CTCTCCAAACCAACAACCGTACAACCTAAGATTCCAAATTCCTAATAAATTTGGAAGAAAAAGA
CTGAATATGCTTTTCCAAAAAAATACAAAACATATAGCAATAGACACAGAACAAACTAGCCAAA
ATCACAGATTCAATGCCTTATAGAAGCAGCACTAAAACCCTGCTAAATTTAACGATTTTATAAA
CAAGCCTAGGTTAAACGAGATACAACAAGCAAGCAAGATCACAACACATAAAATGTCAGAGATG
CCACGATAACCCTACTAAATCACTCACGGGTTGAACAACATAGAGAACTACCTAGGAATTCTCC
ATCCTACCATATGATAGCAATAACAATTACAAACAAATCAAAGAACCTAAACAAAAAGTCTCGA
ACAGAGGCATCATCGAGAGAGAGAAGCCAGACCCGGGATCCATGTTGATGATGTCGCAGAGCTC
GATGTTCACCGCCCAATCCGGCCCGATCAGCATGTCGCTCGTCGCCCTCTCCGCGCACGCCACG
GCCGTCGCCATTTTCCCCCTCTCACCACCAAAAACCCTAAATC
Conservation Information
Conserved circRNAs NA
PMCS 0.209407196
Functional Information
Coding potential Y
Potential coding position 5005748-5003738(+)
5005846-5005798(-)
Potential amino acid sequence MLMMSQSSMFTAQSGPISMSLVALSAHATAVAIFPLSPPKTLNPFSLLS*(+)
MATAVACAERATSDMLIGPDWAVNIELCDIINMDPGQAKDTLKLLKKRLGNKNSKVQILTLYVL
ETLSKNCGDVVYQQIIERDILSEMVKIVKKKDLGFLVVRGGKWRRPWRARRGRRATC*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA