Detail information of Os11g0199700_circ_g.8


General Information
CircRNA Name Os11g0199700_circ_g.8
ID in PlantcircBase osa_circ_008775
Alias Os_ciR4607
Organism Oryza sativa
Position chr11: 5003722-5004181  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os11g0199700
Parent gene annotation Similar to VHS and GAT domain protein. (Os11t0199700-01);Similar
to Seed protein B32E (Fragment). (Os11t0199700-02)
Parent gene strand -
Alternative splicing Os11g0199700_circ_g.7 Os11g0199700_circ_g.9
Support reads 4
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os11t0199700-02:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGGACTCTTGAAATACTCACATAAAGCGTCAGAATTTGCACTTTTGAATTCTTGTTTCCCAGG
CGTTTCTTTAGGAGCTTGAGTGTATCCTTGGCTTGTctttttctttactatcttaaccatttca
cttaatatgtctcgctcaatgatttgctggtaaacaacatccccacagtttttgcttagagtct
ctagcacc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTTTCTTTACTATCTTAACCATTTCACTTAATATGTCTCGCTCAATGATTTGCTGGTAAACA
ACATCCCCACAGTTTTTGCTTAGAGTCTCTAGCACCTGAAAAGGAAGACAAACAAACAGAACAA
ATCAGCACATTAAACAAGACATGACTGTGCACATAGAAACTATGCTCTTTGTTTCCTAAATCTG
GAGGAAGCACAAGAAGTTTCCAAAATCTGGAAGAAGAACAAGAAATAACTTCTAAATTTGTGTA
GCTAGTGAAGACAGGTGAATTCTTAAATTTAGGAATGAATCGACCTAAAACTCACATTGTTAAA
ACAAAAAAATCAGAAGATAACACACTGAGTATCAATATACAAGGACTCTTGAAATACTCACATA
AAGCGTCAGAATTTGCACTTTTGAATTCTTGTTTCCCAGGCGTTTCTTTAGGAGCTTGAGTGTA
TCCTTGGCTTGT
Conservation Information
Conserved circRNAs NA
PMCS 0.175723986
Functional Information
Coding potential Y
Potential coding position 5003747-5003767(-)
Potential amino acid sequence MVKIVKKKTSQGYTQAPKETPGKQEFKSANSDALCARDSKQKLWGCCLPANH*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015