Detail information of Os03g0820100_circ_g.2


General Information
CircRNA Name Os03g0820100_circ_g.2
ID in PlantcircBase osa_circ_022472
Alias NA
Organism Oryza sativa
Position chr3: 34413949-34417159  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0820100
Parent gene annotation Similar to Auxin-resistance protein AXR1. (Os03t0820100-01)
Parent gene strand +
Alternative splicing Os03g0820100_circ_g.1 Os03g0820100_circ_g.3 Os03g0820100_circ_g.4 Os03g0820100_circ_g.5 Os03g0820100_circ_g.6 Os03g0820100_circ_g.7 Os03g0820100_circ_g.8
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0820100-01:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCTTTCTCTCGCTTGCTACTTACAGGAATTTATTGCAAATGAGGGCAACGGTGAGCTACCTCT
TGAGGGGACGATACCTGATATGACTTCACTTACTGAtggatgcagaatgcttggggcaatcaag
agcaaaatctgtatgttcgttcctgcaagagctgaatgatgctgtaaatgccaagtttgtcgag
gagtctcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGGATGCAGAATGCTTGGGGCAATCAAGAGCAAAATCTGTATGTTCGTTCCTGCAAGAGCTGAA
TGATGCTGTAAATGCCAAGTTTGTCGAGGAGTCTCCTCTGGCTCTCATAGACACAAACCCTTCA
TTCTTTTCCCAATTTACCGTAGTCATTGCTACTCAGGTGTGTGTTTACTCTTATGGTAAGATGC
AAAATCAGTGATTGATTTTCTTGACTTCTCTGCGTAGCCAGAACATTTAACAAGAAGATTTAAA
AGTCAAGGAAATGAGAATTGGCAAGTTTTTATAATCGCACAGGCGCATTAGATATTCATAGATA
TACTCCCTCTAGTAAGAGATGCTTTTTTAGTGTGGACAGTCAAACTTTTATTATTTTAGCTATT
TACTACACATGGATTGTTAGGAACAATGTGCACGTAGTTTTTCCTCTCGCGGCCAAATTTTGCT
GATACCCAGTTTTTTCTACTGCAGCTTCCAGAGAGATCTTTACTGAAACTAGATGATATCTGCA
GGAAAGCAAATATTGTGTTGGTTGCTGCACGTTCATATGGTCTAACTGGTCTAGTCAGGATCAG
CGTTAAGGTACCTTTATTGATCTGTGCAAGAGTTTCTGAGTTGTTCTTTATTTGACTTTTAGCG
GTGGACTGCATCTTGTTTCCTGACCTCATTATTTAGGACTTATTAATGTTGCTTGGCGGTTTTC
ATTTCCACAGTAGTCATGAGCCAAAGCATTTTCACCAGACTGAAAACTGTTTCCCTAACTATTG
AGCAGGAGCACAATGTTATAGAATCAAAACCGGACCACTTCCTGGATGATTTACGCCTTCACAA
TCCATGGGTTGAACTCAAGCAGTAAGAGTTATTTGTACCTACATTGTTGGCATAGCAAGTTGCA
TGATCCTTTTCTCATTCTAGATGAAATCACTGTTGATCTTAATGCTTATGTTTTTCAGATTTGC
AAAGTCAATTGATATAAATGATAAAGATCCTGTTGTGCACAAGCACACTCCCTACATTGTTATC
CTTGTGAGGCTTGCAGAAAAATGGGCAGATGCACATGATGGGCGCTTACCTTCGACTAGGCAAG
AGAAAAATGAATTCAAGGTACGTGTTTTGGGTTGTTGCCCCAATCAGTAAAAAGTGGTTGCTAA
TGTGTTTTGGGGACTGTCAGGTTATTGACTAATCTAATATCTTCTTCAGGCACTGATTCGAGAA
TATATGCTTAATTTAGATGAAGAAAACTACAAAGAAGCAGTGGAGTCCTCGTATAAAGTCTCTG
TTACTCCAGGGATCAGTAAGTTTATTTTTAAATGTTCTTCTATCAGCATAATTTTACTTGCAGA
CATAATTTTGTGTGCTTGACTATTTCCTTTCTTAAATACCACTAGTAAAAACTACTTGAATTAA
CTTGAAGTTGTCACTCTAGTTTACATAATGAATGAATGTGGCCTATGTGTTAACAAACACCTCC
TGGGTCTTGTACTTACATGTAGGCTGTGTTCGGACATCAGGGTTGGGAACACTTATCCTGCGCA
TGGAAAACAGAACGGTCCATTAACACATGATTAATTAAGTATTACGTAATTTTTTTTTCAAAAA
TGGATTAATATGATTTTTTAAGCAACTTTCGTATAGAAGCTTTTTTTAAAAAAACGCATGGTTT
AGCAGTTTGAAAAGCGTGCGCGCGGAACACGAGGAAGAGGTGTTGGGAACTAAGGATACCGAAC
ACAGCCGTAGTCTCTTTTTGAACCCATAAATATTTTAACTTATTTATAAATATCTGTTGTATTC
TTGTTGTATGTTCCTGCAGCCATGCACGTGTACACAATATAACATAGCTTCTGTGCAGAACTGC
AAGTTCTAATTAGTGGTTAATTTCTTCTAGGTGATGAGATCCGTCAGATAATTGATGATAGCTC
CGCTGAAGTGAATTCATCTTCTTCAGATTTCTGGGTTTTAGTGGCTGCTTTGAAGGTAGTTATA
ATTGTGATTTACAATTATGGAATGCCAACTTCTATTGTCTGATATGCCATACCACTGAGCTGTT
ATCTGAGGTTCCAGGCACTCTTGATAAAGTTTGTTGTTGAAACCAAATTGGAAAGTATCATACG
TTGTTGAGGTGTCAGCAATATTCAATGATACTTTTCTTTTTTAAAAAAGTGTATCATATGTTGT
TGAGGTCTCTCGGCGCTATTCAATGATTCTTTGTTTTAAAAAAGTGAATCATATGTTAGTTGAG
GTGTCTCTGCGATATTCAATGAACCTGCATGATCTAGACACCCAGTTCTAGTTTTATTTTTTGG
GCTAAAATAACAAGTCAGATCCAAAAGGTTAATCTTCTCTCTAGCCAGATGCCTCATATAACCT
GAAGCAAATGTCAGGTAGCTTTGGAATTTTGATACTTATGCTAAAGCTGCATATGAGTTCTCTC
CCTGGAGAATGCTCATTTAGAACAAAAAAGCTCTAGAAGCTTTGTGTGTCTGAAGCTGCTTTCA
TAATGAATGTATATTAAAAAGCCTGAAATAATGTGTTGTTTATGAACTATCTTCACACTTACCA
TCTGTAAAGTTGCACCATATATCCCTTTAGGAATGTTTCCATTTTACATCCCTCAGCTTAGCAA
GAAGTCTACTAAACGCACCTCAACTTCTCAGGAAATATATCGAACACTGACAAGTACAAAATTG
ATTATCGAGCACCAAAAATTTAGTAAACCTGGTAAATTTTCAACCCAAAGTGTTTTTGGAGGAG
CCGCAGTTGCTGGCATGAATCCAACTCAAGGTGTTCTTTCTGATTAAAAAAAACTCTGTTCTTT
TGCTATATCGACAGTAACATCATGGGTATAATTCAAAAGGTTAGCTTGCTTAGTTGTCTAAACC
ATCCAAACAAGAAAAAGAAATACAGCATTGACATTTCCAATGGTAGTGAGTCTGACTCTTGAGT
GCCACCGGAAGAAAGCGTATATAGCTTCTGAATATATGATATTATTTTGGAGGGTATTAAATTT
CTTTGAGAGTTCAGGGGTGTAACATGGACTTACTCATACTTTATGCTTTCTTTTTTTGGTTGAA
ATTATTGTTTTTTATTAGCATTCATGTCTCAATTTGGATTTCTTTCTCTCGCTTGCTACTTACA
GGAATTTATTGCAAATGAGGGCAACGGTGAGCTACCTCTTGAGGGGACGATACCTGATATGACT
TCACTTACTGA
Conservation Information
Conserved circRNAs NA
PMCS 0.110130162
Functional Information
Coding potential Y
Potential coding position 34417160-34414012(+)
34415169-34414012(+)
34414104-34417151(-)
Potential amino acid sequence MDAECLGQSRAKSVCSFLQELNDAVNAKFVEESPLALIDTNPSFFSQFTVVIATQLPERSLLKL
DDICRKANIVLVAARSYGLTGLVRISVKEHNVIESKPDHFLDDLRLHNPWVELKQFAKSIDIND
KDPVVHKHTPYIVILVRLAEKWADAHDGRLPSTRQEKNEFKALIREYMLNLDEENYKEAVESSY
KVSVTPGISDEIRQIIDDSSAEVNSSSSDFWVLVAALKEFIANEGNGELPLEGTIPDMTSLTDG
CRMLGAIKSKICMFVPARAE*(+)
MLNLDEENYKEAVESSYKVSVTPGISDEIRQIIDDSSAEVNSSSSDFWVLVAALKEFIANEGNG
ELPLEGTIPDMTSLTDGCRMLGAIKSKICMFVPARAE*(+)
MTTVNWEKNEGFVSMRARGDSSTNLAFTASFSSCRNEHTDFALDCPKHSASISK*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017