Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os03g0820100_circ_g.2 |
ID in PlantcircBase | osa_circ_022472 |
Alias | NA |
Organism | Oryza sativa |
Position | chr3: 34413949-34417159 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os03g0820100 |
Parent gene annotation |
Similar to Auxin-resistance protein AXR1. (Os03t0820100-01) |
Parent gene strand | + |
Alternative splicing | Os03g0820100_circ_g.1 Os03g0820100_circ_g.3 Os03g0820100_circ_g.4 Os03g0820100_circ_g.5 Os03g0820100_circ_g.6 Os03g0820100_circ_g.7 Os03g0820100_circ_g.8 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os03t0820100-01:7 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.110130162 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
34417160-34414012(+) 34415169-34414012(+) 34414104-34417151(-) |
Potential amino acid sequence |
MDAECLGQSRAKSVCSFLQELNDAVNAKFVEESPLALIDTNPSFFSQFTVVIATQLPERSLLKL DDICRKANIVLVAARSYGLTGLVRISVKEHNVIESKPDHFLDDLRLHNPWVELKQFAKSIDIND KDPVVHKHTPYIVILVRLAEKWADAHDGRLPSTRQEKNEFKALIREYMLNLDEENYKEAVESSY KVSVTPGISDEIRQIIDDSSAEVNSSSSDFWVLVAALKEFIANEGNGELPLEGTIPDMTSLTDG CRMLGAIKSKICMFVPARAE*(+) MLNLDEENYKEAVESSYKVSVTPGISDEIRQIIDDSSAEVNSSSSDFWVLVAALKEFIANEGNG ELPLEGTIPDMTSLTDGCRMLGAIKSKICMFVPARAE*(+) MTTVNWEKNEGFVSMRARGDSSTNLAFTASFSSCRNEHTDFALDCPKHSASISK*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |