Detail information of AT3G14990_circ_g.5


General Information
CircRNA Name AT3G14990_circ_g.5
ID in PlantcircBase ath_circ_021854
Alias 3:5048354-5048711
Organism Arabidpsis thaliana
Position chr3: 5048354-5048711  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT3G14990
Parent gene annotation Protein DJ-1 homolog A
Parent gene strand +
Alternative splicing AT3G14990_circ_g.1 AT3G14990_circ_g.2 AT3G14990_circ_g.3 AT3G14990_circ_g.4 AT3G14990_circ_g.6 AT3G14990_circ_g.7 AT3G14990_circ_g.8
Support reads 1/1/2
Tissues seedling;root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT3G14990.3:2
AT3G14990.1:2
AT3G14990.2:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTATCCTTTTGAAATCAGCTGCTTCGTCCTAACCCTGGTGAGGAGTTTACTTTTACTGAGCTT
AACCAAACAAACTGGTCATTTGAAGATACACCACAGgcaacgggttaccctgtttttatggaga
aacttgcggctacttgtgcaactgctgttgagtcaagagtgcaaattgatggaagaatagtgac
cagtcgtg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 267
Transcript exons: 5048354-5048539,5048631-5048711
GCAACGGGTTACCCTGTTTTTATGGAGAAACTTGCGGCTACTTGTGCAACTGCTGTTGAGTCAA
GAGTGCAAATTGATGGAAGAATAGTGACCAGTCGTGGACCAGGAACCACCATTGAATTCTCCAT
CACGCTTATAGAGCAGTTGTTTGGGAAAGAAAAAGCTGATGAAGTCTCCAGTATCTTGCTGCTT
CGTCCTAACCCTGGTGAGGAGTTTACTTTTACTGAGCTTAACCAAACAAACTGGTCATTTGAAG
ATACACCACAG

Genomic sequence GCAACGGGTTACCCTGTTTTTATGGAGAAACTTGCGGCTACTTGTGCAACTGCTGTTGAGTCAA
GAGTGCAAATTGATGGAAGAATAGTGACCAGTCGTGGACCAGGAACCACCATTGAATTCTCCAT
CACGCTTATAGAGCAGTTGTTTGGGAAAGAAAAAGCTGATGAAGTCTCCAGTATCTTGGTATGT
TTTGTCTCTGCCTCTTTTATCAACCGCTGTGGTACGTGTTCATGTCACCTCCTCGTAGACTTAC
TTGTTATCCTTTTGAAATCAGCTGCTTCGTCCTAACCCTGGTGAGGAGTTTACTTTTACTGAGC
TTAACCAAACAAACTGGTCATTTGAAGATACACCACAG
Conservation Information
Conserved circRNAs NA
PMCS 0.301837676
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020