Detail information of AT3G14990_circ_g.3


General Information
CircRNA Name AT3G14990_circ_g.3
ID in PlantcircBase ath_circ_021852
Alias At_ciR960, Ath_circ_FC1994, Ath_circ_FC5136
Organism Arabidpsis thaliana
Position chr3: 5048110-5048711  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder, find_circ
Parent gene AT3G14990
Parent gene annotation Protein DJ-1 homolog A
Parent gene strand +
Alternative splicing AT3G14990_circ_g.1 AT3G14990_circ_g.2 AT3G14990_circ_g.4 AT3G14990_circ_g.5 AT3G14990_circ_g.6 AT3G14990_circ_g.7 AT3G14990_circ_g.8
Support reads 6/23
Tissues leaf/root, whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT3G14990.2:3
AT3G14990.3:3
AT3G14990.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTATCCTTTTGAAATCAGCTGCTTCGTCCTAACCCTGGTGAGGAGTTTACTTTTACTGAGCTT
AACCAAACAAACTGGTCATTTGAAGATACACCACAGggagggcttcccggtggcgagactctta
aaaactgtaaatctttagagaacatggtcaagaaacaagactctgatggccgacttaacgcagc
tatatgtt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 417
Transcript exons: 5048110-5048259,5048354-5048539,5048631-5048711
GGAGGGCTTCCCGGTGGCGAGACTCTTAAAAACTGTAAATCTTTAGAGAACATGGTCAAGAAAC
AAGACTCTGATGGCCGACTTAACGCAGCTATATGTTGTGCTCCTGCCTTGGCTCTTGGTACTTG
GGGTCTACTAGAAGGCAAGAAAGCAACGGGTTACCCTGTTTTTATGGAGAAACTTGCGGCTACT
TGTGCAACTGCTGTTGAGTCAAGAGTGCAAATTGATGGAAGAATAGTGACCAGTCGTGGACCAG
GAACCACCATTGAATTCTCCATCACGCTTATAGAGCAGTTGTTTGGGAAAGAAAAAGCTGATGA
AGTCTCCAGTATCTTGCTGCTTCGTCCTAACCCTGGTGAGGAGTTTACTTTTACTGAGCTTAAC
CAAACAAACTGGTCATTTGAAGATACACCACAG

Genomic sequence GGAGGGCTTCCCGGTGGCGAGACTCTTAAAAACTGTAAATCTTTAGAGAACATGGTCAAGAAAC
AAGACTCTGATGGCCGACTTAACGCAGCTATATGTTGTGCTCCTGCCTTGGCTCTTGGTACTTG
GGGTCTACTAGAAGGCAAGAAAGTAAGTCAGAAGTGATCAGTATATTTCCAAGGGCGTTTATTT
ATCTTTTTTTCAGGCCTTGTAATGTCTTGTTATTACATGGGGTTTCTTGCAGGCAACGGGTTAC
CCTGTTTTTATGGAGAAACTTGCGGCTACTTGTGCAACTGCTGTTGAGTCAAGAGTGCAAATTG
ATGGAAGAATAGTGACCAGTCGTGGACCAGGAACCACCATTGAATTCTCCATCACGCTTATAGA
GCAGTTGTTTGGGAAAGAAAAAGCTGATGAAGTCTCCAGTATCTTGGTATGTTTTGTCTCTGCC
TCTTTTATCAACCGCTGTGGTACGTGTTCATGTCACCTCCTCGTAGACTTACTTGTTATCCTTT
TGAAATCAGCTGCTTCGTCCTAACCCTGGTGAGGAGTTTACTTTTACTGAGCTTAACCAAACAA
ACTGGTCATTTGAAGATACACCACAG
Conservation Information
Conserved circRNAs NA
PMCS 0.237063372
Functional Information
Coding potential Y
Potential coding position 5048161-5048708(+)
Potential amino acid sequence MVKKQDSDGRLNAAICCAPALALGTWGLLEGKKATGYPVFMEKLAATCATAVESRVQIDGRIVT
SRGPGTTIEFSITLIEQLFGKEKADEVSSILLLRPNPGEEFTFTELNQTNWSFEDTPQGGLPGG
ETLKNCKSLENMVKKQDSDGRLNAAICCAPALALGTWGLLEGKKATGYPVFMEKLAATCATAVE
SRVQIDGRIVTSRGPGTTIEFSITLIEQLFGKEKADEVSSILLLRPNPGEEFTFTELNQTNWSF
EDTPQGGLPGGETLKNCKSLENMVKKQDSDGRLNAAICCAPALALGTWGLLEGKKATGYPVFME
KLAATCATAVESRVQIDGRIVTSRGPGTTIEFSITLIEQLFGKEKADEVSSILLLRPNPGEEFT
FTELNQTNWSFEDTPQGGLPGGETLKNCKSLENMVKKQDSDGRLNAAICCAPALALGTWGLLEG
KKATGYPVFMEKLAATCATAVESRVQIDGRIVTSRGPGTTIEFSITLIEQLFGKEKADEVSSIL
LLRPNPGEEFTFTELNQTNWSFEDTPQ(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA