Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT3G14990_circ_g.3 |
ID in PlantcircBase | ath_circ_021852 |
Alias | At_ciR960, Ath_circ_FC1994, Ath_circ_FC5136 |
Organism | Arabidpsis thaliana |
Position | chr3: 5048110-5048711 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, KNIFE, PcircRNA_finder, find_circ |
Parent gene | AT3G14990 |
Parent gene annotation |
Protein DJ-1 homolog A |
Parent gene strand | + |
Alternative splicing | AT3G14990_circ_g.1 AT3G14990_circ_g.2 AT3G14990_circ_g.4 AT3G14990_circ_g.5 AT3G14990_circ_g.6 AT3G14990_circ_g.7 AT3G14990_circ_g.8 |
Support reads | 6/23 |
Tissues | leaf/root, whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT3G14990.2:3 AT3G14990.3:3 AT3G14990.1:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.237063372 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
5048161-5048708(+) |
Potential amino acid sequence |
MVKKQDSDGRLNAAICCAPALALGTWGLLEGKKATGYPVFMEKLAATCATAVESRVQIDGRIVT SRGPGTTIEFSITLIEQLFGKEKADEVSSILLLRPNPGEEFTFTELNQTNWSFEDTPQGGLPGG ETLKNCKSLENMVKKQDSDGRLNAAICCAPALALGTWGLLEGKKATGYPVFMEKLAATCATAVE SRVQIDGRIVTSRGPGTTIEFSITLIEQLFGKEKADEVSSILLLRPNPGEEFTFTELNQTNWSF EDTPQGGLPGGETLKNCKSLENMVKKQDSDGRLNAAICCAPALALGTWGLLEGKKATGYPVFME KLAATCATAVESRVQIDGRIVTSRGPGTTIEFSITLIEQLFGKEKADEVSSILLLRPNPGEEFT FTELNQTNWSFEDTPQGGLPGGETLKNCKSLENMVKKQDSDGRLNAAICCAPALALGTWGLLEG KKATGYPVFMEKLAATCATAVESRVQIDGRIVTSRGPGTTIEFSITLIEQLFGKEKADEVSSIL LLRPNPGEEFTFTELNQTNWSFEDTPQ(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017;Chen et al., 2017a |