Plant Circular RNA Database

Detail information of Os02g0285800_circ_g.4

			
						 General Information
					
						CircRNA Name
						Os02g0285800_circ_g.4
					
						ID in PlantcircBase
						osa_circ_014292
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 10740470-10745556  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os02g0285800						
					
						Parent gene annotation
						
							Similar to GTP-binding protein typA (Tyrosine phosphorylated pro
tein A). (Os02t0285800-01);Similar to predicted protein. (Os02t0
285800-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os02g0285800_circ_g.1 Os02g0285800_circ_g.2 Os02g0285800_circ_g.3 Os02g0285800_circ_g.5 Os02g0285800_circ_g.6 Os02g0285800_circ_g.7 Os02g0285800_circ_g.8 Os02g0285800_circ_g.9 Os02g0285800_circ_g.10 Os02g0285800_circ_g.11 Os02g0285800_circ_g.12 Os02g0285800_circ_g.13 						
					
						Support reads
						1
					
						Tissues
						leaf
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0285800-02:10
Os02t0285800-01:12

General Information
CircRNA Name	Os02g0285800_circ_g.4
ID in PlantcircBase	osa_circ_014292
Alias	NA
Organism	Oryza sativa
Position	chr2: 10740470-10745556 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os02g0285800
Parent gene annotation	Similar to GTP-binding protein typA (Tyrosine phosphorylated pro tein A). (Os02t0285800-01);Similar to predicted protein. (Os02t0 285800-02)
Parent gene strand	+
Alternative splicing	Os02g0285800_circ_g.1 Os02g0285800_circ_g.2 Os02g0285800_circ_g.3 Os02g0285800_circ_g.5 Os02g0285800_circ_g.6 Os02g0285800_circ_g.7 Os02g0285800_circ_g.8 Os02g0285800_circ_g.9 Os02g0285800_circ_g.10 Os02g0285800_circ_g.11 Os02g0285800_circ_g.12 Os02g0285800_circ_g.13
Support reads	1
Tissues	leaf
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0285800-02:10 Os02t0285800-01:12

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							GGCCAAATAGTTGGTATCCATCAGCGACCAGGTGATTTAGCAATTAATGTGTGCAAGAAAAAGG
CTGCAACAAATGTCCGCTCCAACAAGGAAACTACAGctgggaagagtggtcaagcaactagaag
agatgtgaggaatatagcaattgttgctcatgtcgatcatggaaagacaactctggtggattca
atgttaag

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

Sequences
Splice junction sequence	GGCCAAATAGTTGGTATCCATCAGCGACCAGGTGATTTAGCAATTAATGTGTGCAAGAAAAAGG CTGCAACAAATGTCCGCTCCAACAAGGAAACTACAGctgggaagagtggtcaagcaactagaag agatgtgaggaatatagcaattgttgctcatgtcgatcatggaaagacaactctggtggattca atgttaag
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.11774148

Conservation Information
Conserved circRNAs	NA
PMCS	0.11774148

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							10745504-10740502(+)
10740563-10745553(+)
10740539-10745495(-)
						
					

						Potential amino acid sequence
						
							MCARKRLQQMSAPTRKLQLGRVVKQLEEM*(+)
MLRQAKVFRDNQVVQERIMDSNDLERERGITILSKNTSITYKGTKINIIDTPGHSDFGGEVERV
LNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPTARPEFVVNSTFELFIELN
ATDEQCDFQTVYASGIKGKAGLSPENLGDDLGPLFEAILRCIPEPRIEKDGALQLLVSNTEYDE
HKGRIAIGRLHAGELQRGMEVKVCTPDDACRISKISELFVYQNFSRVPVDNVSAGDICAVCGIN
DIMIGETIADKVSGTPLPTIKIEEPTVRMSFSINTSPFVGKEGKYVTSRNLRDRLYRELERNLA
MKVEDGETADTFLVSGRGTLHLTILIENMRREGFEFMIGPPKVINKTVDGKLQEPYEIAAVEVP
EEYMGSVVELLGKRRGQMVDMQPSGPEGTTLLKYKIPTRGLIGLRNAVLTASRGTAILNTIFDS
YGPWAGDLSSRDQGSLVAFEDGSTTSYALLNAQERGILFVSPGQDVYKGQIVGIHQRPGDLAIN
VCKKKAATNVRSNKETTAGKSGQATRRDVRNIAIVAHVDHGKTTLVDSMLRQAKVFRDNQVVQE
RIMDSNDLERERGITILSKNTSITYKGTKINIIDTPGHSDFGGEVERVLNMVEGVLLVVDSVEG
PMPQTRFVLKKALEFGHAVVVVVNKIDRPTARPEFVVNSTFELFIELNATDEQCDFQTVYASGI
KGKAGLSPENLGDDLGPLFEAILRCIPEPRIEKDGALQLLVSNTEYDEHKGRIAIGRLHAGELQ
RGMEVKVCTPDDACRISKISELFVYQNFSRVPVDNVSAGDICAVCGINDIMIGETIADKVSGTP
LPTIKIEEPTVRMSFSINTSPFVGKEGKYVTSRNLRDRLYRELERNLAMKVEDGETADTFLVSG
RGTLHLTILIENMRREGFEFMIGPPKVINKTVDGKLQEPYEIAAVEVPEEYMGSVVELLGKRRG
QMVDMQPSGPEGTTLLKYKIPTRGLIGLRNAVLTASRGTAILNTIFDSYGPWAGDLSSRDQGSL
VAFEDGSTTSYALLNAQERGILFVSPGQDVYKGQIVGIHQRPGDLAINVCKKKAATNVRSNKET
TAGKSGQATRRDVRNIAIVAHVDHGKTTLVDSMLRQAKVFRDNQVVQERIMDSNDLERERGITI
LSKNTSITYKGTKINIIDTPGHSDFGGEVERVLNMVEGVLLVVDSVEGPMPQTRFVLKKALEFG
HAVVVVVNKIDRPTARPEFVVNSTFELFIELNATDEQCDFQTVYASGIKGKAGLSPENLGDDLG
PLFEAILRCIPEPRIEKDGALQLLVSNTEYDEHKGRIAIGRLHAGELQRGMEVKVCTPDDACRI
SKISELFVYQNFSRVPVDNVSAGDICAVCGINDIMIGETIADKVSGTPLPTIKIEEPTVRMSFS
INTSPFVGKEGKYVTSRNLRDRLYRELERNLAMKVEDGETADTFLVSGRGTLHLTILIENMRRE
GFEFMIGPPKVINKTVDGKLQEPYEIAAVEVPEEYMGSVVELLGKRRGQMVDMQPSGPEGTTLL
KYKIPTRGLIGLRNAVLTASRGTAILNTIFDSYGPWAGDLSSRDQGSLVAFEDGSTTSYALLNA
QERGILFVSPGQDVYKGQIVGIHQRPGDLAINVCKKKAATNVRSNKETTAGKSGQATRRDVRNI
AIVAHVDHGKTTLVDSMLRQAKVFRDNQVVQERIMDSNDLERERGITILSKNTSITYKGTKINI
IDTPGHSDFGGEVERVLNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPTAR
PEFVVNSTFELFIELNATDEQCDFQTVYASGIKGKAGLSPENLGDDLGPLFEAILRCIPEPRIE
KDGALQLLVSNTEYDEHKGRIAIGRLHAGELQRGMEVKVCTPDDACRISKISELFVYQNFSRVP
VDNVSAGDICAVCGINDIMIGETIADKVSGTPLPTIKIEEPTVRMSFSINTSPFVGKEGKYVTS
RNLRDRLYRELERNLAMKVEDGETADTFLVSGRGTLHLTILIENMRREGFEFMIGPPKVINKTV
DGKLQEPYEIAAVEVPEEYMGSVVELLGKRRGQMVDMQPSGPEGTTLLKYKIPTRGLIGLRNAV
LTASRGTAILNTIFDSYGPWAGDLSSRDQGSLVAFEDGSTTSYALLNAQERGILFVSPGQDVYK
GQIVGIHQRPGDLAINVCKKKAATNVRSNKETT(+)
MIDMSNNCYIPHISSSCLTTLPSCSFLVGADICCSLFLAHINC*(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	10745504-10740502(+) 10740563-10745553(+) 10740539-10745495(-)
Potential amino acid sequence	MCARKRLQQMSAPTRKLQLGRVVKQLEEM(+) MLRQAKVFRDNQVVQERIMDSNDLERERGITILSKNTSITYKGTKINIIDTPGHSDFGGEVERV LNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPTARPEFVVNSTFELFIELN ATDEQCDFQTVYASGIKGKAGLSPENLGDDLGPLFEAILRCIPEPRIEKDGALQLLVSNTEYDE HKGRIAIGRLHAGELQRGMEVKVCTPDDACRISKISELFVYQNFSRVPVDNVSAGDICAVCGIN DIMIGETIADKVSGTPLPTIKIEEPTVRMSFSINTSPFVGKEGKYVTSRNLRDRLYRELERNLA MKVEDGETADTFLVSGRGTLHLTILIENMRREGFEFMIGPPKVINKTVDGKLQEPYEIAAVEVP EEYMGSVVELLGKRRGQMVDMQPSGPEGTTLLKYKIPTRGLIGLRNAVLTASRGTAILNTIFDS YGPWAGDLSSRDQGSLVAFEDGSTTSYALLNAQERGILFVSPGQDVYKGQIVGIHQRPGDLAIN VCKKKAATNVRSNKETTAGKSGQATRRDVRNIAIVAHVDHGKTTLVDSMLRQAKVFRDNQVVQE RIMDSNDLERERGITILSKNTSITYKGTKINIIDTPGHSDFGGEVERVLNMVEGVLLVVDSVEG PMPQTRFVLKKALEFGHAVVVVVNKIDRPTARPEFVVNSTFELFIELNATDEQCDFQTVYASGI KGKAGLSPENLGDDLGPLFEAILRCIPEPRIEKDGALQLLVSNTEYDEHKGRIAIGRLHAGELQ RGMEVKVCTPDDACRISKISELFVYQNFSRVPVDNVSAGDICAVCGINDIMIGETIADKVSGTP LPTIKIEEPTVRMSFSINTSPFVGKEGKYVTSRNLRDRLYRELERNLAMKVEDGETADTFLVSG RGTLHLTILIENMRREGFEFMIGPPKVINKTVDGKLQEPYEIAAVEVPEEYMGSVVELLGKRRG QMVDMQPSGPEGTTLLKYKIPTRGLIGLRNAVLTASRGTAILNTIFDSYGPWAGDLSSRDQGSL VAFEDGSTTSYALLNAQERGILFVSPGQDVYKGQIVGIHQRPGDLAINVCKKKAATNVRSNKET TAGKSGQATRRDVRNIAIVAHVDHGKTTLVDSMLRQAKVFRDNQVVQERIMDSNDLERERGITI LSKNTSITYKGTKINIIDTPGHSDFGGEVERVLNMVEGVLLVVDSVEGPMPQTRFVLKKALEFG HAVVVVVNKIDRPTARPEFVVNSTFELFIELNATDEQCDFQTVYASGIKGKAGLSPENLGDDLG PLFEAILRCIPEPRIEKDGALQLLVSNTEYDEHKGRIAIGRLHAGELQRGMEVKVCTPDDACRI SKISELFVYQNFSRVPVDNVSAGDICAVCGINDIMIGETIADKVSGTPLPTIKIEEPTVRMSFS INTSPFVGKEGKYVTSRNLRDRLYRELERNLAMKVEDGETADTFLVSGRGTLHLTILIENMRRE GFEFMIGPPKVINKTVDGKLQEPYEIAAVEVPEEYMGSVVELLGKRRGQMVDMQPSGPEGTTLL KYKIPTRGLIGLRNAVLTASRGTAILNTIFDSYGPWAGDLSSRDQGSLVAFEDGSTTSYALLNA QERGILFVSPGQDVYKGQIVGIHQRPGDLAINVCKKKAATNVRSNKETTAGKSGQATRRDVRNI AIVAHVDHGKTTLVDSMLRQAKVFRDNQVVQERIMDSNDLERERGITILSKNTSITYKGTKINI IDTPGHSDFGGEVERVLNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPTAR PEFVVNSTFELFIELNATDEQCDFQTVYASGIKGKAGLSPENLGDDLGPLFEAILRCIPEPRIE KDGALQLLVSNTEYDEHKGRIAIGRLHAGELQRGMEVKVCTPDDACRISKISELFVYQNFSRVP VDNVSAGDICAVCGINDIMIGETIADKVSGTPLPTIKIEEPTVRMSFSINTSPFVGKEGKYVTS RNLRDRLYRELERNLAMKVEDGETADTFLVSGRGTLHLTILIENMRREGFEFMIGPPKVINKTV DGKLQEPYEIAAVEVPEEYMGSVVELLGKRRGQMVDMQPSGPEGTTLLKYKIPTRGLIGLRNAV LTASRGTAILNTIFDSYGPWAGDLSSRDQGSLVAFEDGSTTSYALLNAQERGILFVSPGQDVYK GQIVGIHQRPGDLAINVCKKKAATNVRSNKETT(+) MIDMSNNCYIPHISSSCLTTLPSCSFLVGADICCSLFLAHINC(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os02g0285800_circ_g.4

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