Detail information of BGIOSGA002499_circ_g.4


General Information
CircRNA Name BGIOSGA002499_circ_g.4
ID in PlantcircBase osi_circ_009324
Alias Chr01:1148622_1152702(MH63RS2), Chr01:1148622_1152702(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 1415291-1418408  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRI2, CIRI2
Parent gene BGIOSGA002499
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA002499_circ_g.1 BGIOSGA002499_circ_g.2 BGIOSGA002499_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-NN
Number of exons covered BGIOSGA002499-TA:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTGACACCATCTATTACTTCTTCATTCGCCAGAACAGTTCCAAGAGCAGGGCACCAATTAACC
GGTACCTCAGCCTGATTGTAAGATAGCAATGCCAGCctcggctgggggggagtggggccgccgg
aggggaggggagggggagagccggtgttgggggcgggggaggcggccggctcggctaggtggag
ggggaggg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCGGCTGGGGGGGAGTGGGGCCGCCGGAGGGGAGGGGAGGGGGAGAGCCGGTGTTGGGGGCGG
GGGAGGCGGCCGGCTCGGCTAGGTGGAGGGGGAGGGGGAGGGTTAGGGTTAGGGTTTCATCCAT
TTCAAAATTATCTGAGCCGTCCATCAAAATGAACAGCTGAGATCGATCAAGGGTTTGGGCCGCA
CCACTTGGGCCACACGCGGGCCAACAGTCTAGCAAGCGAGAGGAAGAGTATAGGGATATAAATT
AGACTTTGGTCGCTTGTAGGCTGAAGAAGAAAGTGGGCCGAAAAAGGCCCATAGAGATAAAAGA
ATTTTTATTTAGATTTTTATTTAAATAAATACTTAAATGATGTTTGTATTATCAAAATTAGCAA
TTAAGCTACGTAAATTCCAAGAAAATTTCAATGAGTGTAATTAATGATATAGAAAATTTAATAA
AAATTAAATCCAACCATAACATTTTATTTCTCACACTTACTTTACTTATAAATTAATTTAATTA
TATACCTACCTACTTAAAAAATACCCAAATATTACAGAAAATTTATATTTCATTTAATTAGAAT
TTAATATGTTCTAATTCAATTTTATCTTTTTTTCTTTCACGATGCGAGCTAAGCAGGAATATTT
TTATCCATCTTGATTATCATTAGCGCAATAAATAATTTACCTATCTTGGAACATTATTATATAC
ATGTTAACGGTGTACTTTATAGAATTTAACAGTTCCTTTACCCGTAGCGAAGCACGGGCATTTT
GCTAGTTAAAACAAACATTGATAGACGCAGTCTATTTGGAGTCAATTATGTAAATTGTTATAAA
ATTATTGAAATTGTGTCATGAATAAGTTACCAGCATGATCCAGCCCATTGTGGCATGGTGCTTG
TTTCCCTTCTAGCAGGCTTCCCAGACAAAGGTTCTACGGTTTTAACCTAAAAAGGCAGCAAAAC
CTTTTAATAGATTTGCTATGTATAAGCAAAAGTAAGGGGGACTAAAACCTCAAAACACATCTCC
ATGCCAACTTTGCCGAACATATAAATATAAATATACTAACAGGTAGTAGTTTAAATTAGATCTC
ATCATTCAATTCCGATATGATTGATAGAAACATACTGACTAGGAGTGTTCTCAGTCATTACAAA
AGAAGCAACAAATTGTTAGTACCAAACTGCTAACAACACATACCCAATCTGTTGCCTTGGTCAG
AGGAGGCTCTCCAGTACCAGTTGGAGTGAAATCATCCAATTCAGGAAGAGTTAAAGGCAACTGG
TTTTCTTGAAGGGGCAGCATTTCATTGGTATCATCACGGTAAATCACAGGGAAAGGTTCACCCC
AATAACGCTGTCTAGCAAAGAGCCAATCTCGAAGCTTGTAGTTCACCTGATAGTTGGGTTTGCT
TAATTATTTTATAGTGAAAGAAGTAGCATGAAGAAGGCTGTTACATGATGAAGTGGGATAAAGA
ATGCACCTTTTTCTTTCCAAAGCCATTAGCCTCTACCCATTCAGTAACTTTCAAAGCAGCATCC
TTGGAAAGCATACCATCAATATTTAATCCAGATGAAGAACTGGATGAGTTTATCATGATACCAT
CATCTGCATATGCCTCCTCAGAGTCACAATTGCCATTGAGTGGACTTACAACCTTAATGATTGG
AAGTTTATATTTCAAGGCAAATTCATGGTCACGTGAGTCATGTGCAGGCACAGCCATGATAGCC
CCAGTGCCATAGCTGCAAGGTAGCATTTAAAATTTAGAGCATGCAAAACTAACAAGTATAAAAG
TAGGTTTTTCATTTCCTCAGATAATTGTTAAATTTACTGCGAGTGTGGGATAACACCCCGCAAT
TCAGTGGTCAATTTCCATGAGTCATGAAAAACAACTCTGCCAGACCCCTTCACATGCATCTGAA
TAAAAGCAAATTCCAACTTCCAAATGAAGAAATGGTTTAAAAAATATATACTAATCATAACAAG
GAAAATCAAAATAATCTTCTTTGAGAACCTAAAGCAGAGAATGTATGTGACAGCTCCACATTCA
GACTGTTCTGTTTAACATTACAGTAAGTAGCATAAAGTGTGTATTTATTTTAAGATGTTGAATT
ACCATGCCCTCTGGCAACCTACAGTGTAGAGTTAATAGCATCATTTTTGTTTCGAAGATGAAGA
TGATGATGCACAATGTAACTTCTGGGTACACAGGAGGCAAAGATGTTTTGACAAACCTTCCTAA
AACATAATCTGCCACCCATATTGGAACTATCTCCCCAGTTGCTGGGTTCTTAGCATAAGAACCA
CTAAAAACTCCAGTTTTTTCCTTCTGAAGATCAGTTCTTTCCAGTTCACTCTTTCTTGCTGTGA
GTTCTATGTATTCCTCTACCTGCTTTTCCAGTTAGTCTATATTATGCTTCTAAACATGATAATG
GTAATGGTGAGAAAAGGGACCAAAAAAACATACATGTACACGTTGTTCCTCAGAAATTAGAGAT
GACAATAGAGAATGCTCGGGTGCCAGAACAACATATCTGCAACAGAAAAGGTGTAATTTAACAT
TGACCATCTAAGAGAAGACTAATAATTTTGTGCAAATTAAAGAAAGGATCCAGAATACACACGT
TGCACCAAAAATTGTGTCAGGTCTTGTTGTGTAAACTAACAAATTAGCACCTAGATCGTGCCCT
TCCTTGTCCACAGCTGAGAATTCAAGCTCAGCGCCTTCTGATCTCCCTATCCAGTTTCTTTGCA
TTTCTTTGATGCTCTCAGGCCAATCAAGTTCATCCAAATCTTCAAGAAGTCGATCAGCATAAGA
TGTAATCCTCAGCATCCACTGGCGCATTGGCTATACAACAAAATATAAAAATCGATCACAGTGG
TATACTTTATTTTCCATACAGGTTCTTAGCAACAGGTACTTTGACACGAAAGAGTATAGATGGA
AGAAAAGGCTAAACTGACAATATAGTGCAGATTCTAAAACATACCTTTCGTATAACAGGATGAC
CACCACGTTCACTGACACCATCTATTACTTCTTCATTCGCCAGAACAGTTCCAAGAGCAGGGCA
CCAATTAACCGGTACCTCAGCCTGATTGTAAGATAGCAATGCCAGC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021